RNA id: AMCG00013272


Basic Information

Item Value
RNA id AMCG00013272
length 1534
RNA type mRNA
GC content 0.44
exon number 8
gene id AMCG00013272
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 26607072 ~ 26614584 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCTTTATTTCTCTGTCTCCTAGCCATCGTTGAGTCCACTTCAGATTGTCTCACACAGAGATGTTTGGCAACCAACCTGGTGAATCTTATCAATAACAGACTTGTCCAGCCAAGCGAGGACTgtaaaattgatgtttttttaaaggagataGTCTTTGAAACTTTGGAAATGaATACACAAACTCTGCAATTATCTAGCATTCTGAAAATACAGATGGTCTGGGTTGACCCTTACCTCTCCTGGGACTCCACTTACCCCTATGATCAGATAGTGCTGCCCGTTAGCAATGTCTGGACGCCCAGTCTTTCTGTGAAAAATGCAAATGGTACCGTATCATACAAATTACTCATGTGGATCACAGTTGGCTGCGATCTCAACCTCTACTTGTATCCCTTTGCTAAAGATAAGTGTCTAATAGCCCTGGATGGCTGGAATGAGTTGCAATGTGGTGAAAGAGTGACTTTTGGGCAAATTATGCTGGCGGGTAAAAGCAGAGGAGACTGGCAAGTTGAATCCGTCATAAAAGAAGATCTGAGAGACACAGTACTTATgGTGTGCATGAGCTCCAAGTCCATAAACGTGCTTATGACACTCATCGTCCCGAGTTTGCTGATCATGTTGGCGGACATTATGTGCTTTTTCCTGCCGCTGGGCGGAGAAGGGGAGCGCATCTCCTTCCGAGTCACTTTGGTCCTCAGCTTTGTCATGTTCCTCCTCATTCTCTCCGGCATACTCCCTGGAAACAGGCAGTGTACTCCTCTGATACAGTACCACTTCTCTGTGTGCCTGATCTTCCTGGTAATGAGTATGATCGAGACCATGCTGGTCATGCGCTTGGCTGTTGATGGTTGTCTCATTCCATTTAGCATTGTTGGGTGCTGCAAATTCAggcacaaacatacaaaaaacagcaaagccCATCAGGAAATTGAAGGTATGGTTCCTGAGCTGTTACGCACTGTTACTCTGCAAGATGCTGAGGTTCGATCGCTACAGAGGATTGTTAAGTACCTTGATGATAAGGTGGAGGAAGAACAGGACACTCAAAAGAATGAGCGCTTTGCTGACATGGTGGACAAGTGCTACCTTCTGGCTTATCTCTGCTCTTTTCTGATTTACATAATAATCATGGCGATTCTGTTTAACAAAAAACCGTGTGATATAGACCACATGGATTTTTAGATTGCTGTTGTCTGGTACTAAAATAAGTTTTCTTTCTCCCACCTTTACATATAGATTTAGCTACCcgatagagatagagatagaaCGACCTATACTCACTGGCCTAAATATGTAAAACCTTACCTGAATAAAGTGTTGGGCATTCATATGTCTATCAAGTAGGCTAGAATTTGTCAATTTCTTTCAGAAGAGGGTTGTCAGATACATGGCCTGTGTGTTTGCATAGTCCCAGGAAAGCAACGTCCTGTTCTGCAGGGTGTTTCTGCCACAGTTCCTCCTCTTCGAGGTGGATTTGTCGTCCGCCATTCATGTCTTGTGTCCTCATGAGATCCTTGAAATGCCTCTGATGGCA

Function

GO: NA

KEGG:

id description
ko04114 Oocyte meiosis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53911 lncRNA downstream 127222 26479611 ~ 26479850 (-) False AMCG00013258
TU53873 lncRNA downstream 239852 26366979 ~ 26367220 (-) True G43204
TU53862 lncRNA downstream 294928 26309353 ~ 26312144 (-) True G43194
TU53849 lncRNA downstream 349249 26254996 ~ 26257823 (-) False G43184
TU54119 lncRNA upstream 379788 26994372 ~ 26995304 (-) True G43400
TU54130 lncRNA upstream 431777 27046361 ~ 27046563 (-) True G43410
TU54132 lncRNA upstream 434984 27049568 ~ 27049842 (-) True G43412
TU54137 lncRNA upstream 440968 27055552 ~ 27059242 (-) True G43417
TU54146 lncRNA upstream 512196 27126780 ~ 27126988 (-) True G43425
AMCG00013260 mRNA downstream 18972 26567270 ~ 26588100 (-) True AMCG00013260
AMCG00013264 mRNA downstream 50456 26553549 ~ 26556616 (-) False AMCG00013264
AMCG00013261 mRNA downstream 55781 26550021 ~ 26551291 (-) True AMCG00013261
AMCG00013262 mRNA downstream 94994 26501196 ~ 26512078 (-) True AMCG00013262
AMCG00013263 mRNA downstream 106307 26495936 ~ 26500765 (-) True AMCG00013263
AMCG00013271 mRNA upstream 33104 26647688 ~ 26649514 (-) True AMCG00013271
AMCG00013277 mRNA upstream 199274 26813858 ~ 26820977 (-) True AMCG00013277
AMCG00013276 mRNA upstream 216000 26830584 ~ 26832689 (-) True AMCG00013276
AMCG00013279 mRNA upstream 273904 26888488 ~ 26892418 (-) True AMCG00013279
AMCG00013278 mRNA upstream 289230 26903814 ~ 26906966 (-) True AMCG00013278
TU53964 other downstream 49748 26556354 ~ 26557324 (-) True AMCG00013264
TU53711 other downstream 1090109 25516080 ~ 25516963 (-) True G43070
TU53641 other downstream 1440314 25163983 ~ 25166758 (-) False AMCG00013223
TU53623 other downstream 1528828 25075393 ~ 25078244 (-) True G43001
TU53519 other downstream 1578068 25025876 ~ 25029004 (-) False AMCG00013216
TU54172 other upstream 658645 27273229 ~ 27293073 (-) True AMCG00013295
TU54196 other upstream 954180 27568764 ~ 27569151 (-) True G43473
TU54344 other upstream 1453629 28068213 ~ 28072787 (-) True G43594
TU54456 other upstream 1852728 28467312 ~ 28467906 (-) True G43684
TU54700 other upstream 2638812 29253396 ~ 29254316 (-) True G43869

Expression Profile