RNA id: AMCG00013277


Basic Information

Item Value
RNA id AMCG00013277
length 1113
RNA type mRNA
GC content 0.55
exon number 12
gene id AMCG00013277
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 26813858 ~ 26820977 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAAATCGCGTGGTGTGCGTGCAGTACATCATCCCGACACTcaaactgtgtctgtgtgtgtgtgagctctGTGCGTGTCGGCTGTGTGGGCCGCTCCCAGAGGGCTGGGGCCGCCAGGGTTGGTAAAAAGAAGAACCCAGGTTTGAAGCTCTCTAAGGAAGTCTTCGAGCAGCCTGCAGCCACTGCGGCTGCACCCAGAGATTTGGACTCCAAAGCCTGTGTTACCATTGGGGAGAAGAACTTTGTGGTGAAAGCAGATGACCTGGAGCAGATCGGCGAGCTGGGCCGAGGGGCGTACGGCGTGGTGGACAAGATGAGACACGTGCCCAGCGGTCTGATCATGGCAGTCAAGAGAATCCGGGCGACTGTGAACACGCAGGAGCAGAAGAGACTCCTGATGGACCTGGATATCTCAATGAGGACCGTGGACTGTTTCTACACCGTGACTTTCTACGGCGCTCTCTTCAGAGAGGGTGATGTCTGGATCTGCATGGAGCTGATGGACACTTCTCTGGACAAGTTTTACAAGCAAGTAATTGAGAAGGGAATGACGATCCCCGAGGACATCTTGGGAAAGATCACCGTCTCCATTGTAAAGGCCTTGGAGCATTTACACAGCAACCTGTCCGTGATTCACAGAGATGTGAAGCCCTCCAATGTGCTCATCAACACGCAGGGCCAGGTCAAGATGTGTGATTTCGGGATCAGCGGCTACCTGGTGGACTCCGTGGCAAAGACCATGGATGCTGGCTGCAAGCCCTACATGGCGCCTGAGAGGATAAACCCAGAACTGAACCAGAAAGGCTACAACGTCAAATCCGACATCTGGAGTTTAGGAATCACCATGATTGAGCTGGCGATCCTGCGCTTCCCCTACGACTCGTGGGGCACGCCGTTCCAGCAGCTCAAACAGGTGGTGGAGGAGCCGTCCCCCCAGCTCCCCGCCGACCGCTTCTCCCAAGAGTTTGTGGACTTCGCTTCCCAGTGCTTGAAGAAGAATTCCAAAGAGAGGCCGACCTACACAGAGCTCATGCTACATCCTTTTTTCACCTCCCACGACGCCAAGGAGACGGACGTTGCCAGCTTCGTCAAGGTCATCCTGGGAGACTGA

Function

GO: NA

KEGG:

id description
K04433 MAP2K6, MKK6; mitogen-activated protein kinase kinase 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53911 lncRNA downstream 334008 26479611 ~ 26479850 (-) False AMCG00013258
TU53873 lncRNA downstream 446638 26366979 ~ 26367220 (-) True G43204
TU53862 lncRNA downstream 501714 26309353 ~ 26312144 (-) True G43194
TU53849 lncRNA downstream 556035 26254996 ~ 26257823 (-) False G43184
TU54119 lncRNA upstream 173395 26994372 ~ 26995304 (-) True G43400
TU54130 lncRNA upstream 225384 27046361 ~ 27046563 (-) True G43410
TU54132 lncRNA upstream 228591 27049568 ~ 27049842 (-) True G43412
TU54137 lncRNA upstream 234575 27055552 ~ 27059242 (-) True G43417
TU54146 lncRNA upstream 305803 27126780 ~ 27126988 (-) True G43425
AMCG00013271 mRNA downstream 164344 26647688 ~ 26649514 (-) True AMCG00013271
AMCG00013272 mRNA downstream 199274 26607072 ~ 26614584 (-) True AMCG00013272
AMCG00013260 mRNA downstream 225758 26567270 ~ 26588100 (-) True AMCG00013260
AMCG00013264 mRNA downstream 257242 26553549 ~ 26556616 (-) False AMCG00013264
AMCG00013261 mRNA downstream 262567 26550021 ~ 26551291 (-) True AMCG00013261
AMCG00013276 mRNA upstream 9607 26830584 ~ 26832689 (-) True AMCG00013276
AMCG00013279 mRNA upstream 67511 26888488 ~ 26892418 (-) True AMCG00013279
AMCG00013278 mRNA upstream 82837 26903814 ~ 26906966 (-) True AMCG00013278
AMCG00013280 mRNA upstream 178597 26999574 ~ 27001457 (-) True AMCG00013280
AMCG00013292 mRNA upstream 324670 27145647 ~ 27159340 (-) True AMCG00013292
TU53964 other downstream 256534 26556354 ~ 26557324 (-) True AMCG00013264
TU53711 other downstream 1296895 25516080 ~ 25516963 (-) True G43070
TU53641 other downstream 1647100 25163983 ~ 25166758 (-) False AMCG00013223
TU53623 other downstream 1735614 25075393 ~ 25078244 (-) True G43001
TU53519 other downstream 1784854 25025876 ~ 25029004 (-) False AMCG00013216
TU54172 other upstream 452252 27273229 ~ 27293073 (-) True AMCG00013295
TU54196 other upstream 747787 27568764 ~ 27569151 (-) True G43473
TU54344 other upstream 1247236 28068213 ~ 28072787 (-) True G43594
TU54456 other upstream 1646335 28467312 ~ 28467906 (-) True G43684
TU54700 other upstream 2432419 29253396 ~ 29254316 (-) True G43869

Expression Profile