RNA id: AMCG00013279


Basic Information

Item Value
RNA id AMCG00013279
length 2722
RNA type mRNA
GC content 0.45
exon number 6
gene id AMCG00013279
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 26888488 ~ 26892418 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTTCCTGTTTGAAGCCAtgtggtttgttttccattaggggtgaagattaaaaatattgaaCCTACCAAATCAAACTACCTGAGAATATGGGCAAACATAGAAACATTAAGAAAGTCGATCCCTTTAAGAAAGGGTCCAAAAAAGATCAACCGCAAAGTAAAGCGCCGAAGAAAGATGCTAAACCCAATCTCGGAGAAGATCTGGACCACATCCCCTACCGGCTTCGAGAGATCATGAAGAGCAAGGAAAGGATGAAAAGACAACGGCTCCAGGCCGAGGCCTTCCAGCTGCAGACCGATATCCCCGTGCCCAAGTTCCACAGAGGCAAGAGGGAGTCGGAGAAAGCATACTTCAGGCGCATGAACCAGGAGACTCAGCACGTCCTCTTCCTCACAAACAACCAGCTGGAGAACCAACCAGAGAAGGAGGCGCCCCAGGAGAAGGCCAAgtcagagaagaagaaagaCTTCGACAAGACCAGACTCAACAGGCTGCTGAAGAAGAAGGTGGAAAGGAAAGAGCAGAGAAAAGAGAAGGAGATGTTCACAGacactgtgaaatttggtgagGTTGCCATGGCACCCCCATCCCTCACCGCGAAGCCCAGGAAAGCGCCGATCAAGGCAAAGGGTGGATGCAAGAACCTGCTGCTGAGTCCCCTGCTCGGCTCGGCCCTGGTCTCCGCCGTCAAACCTTCCATGGCCCGGCAGAGGATAATGGAGGAGGAGAGGCAACGCGTGGTGCTGGCCTACCGCCGTCTCAAAGCAGCAAAGCAGGAGAAGCGGGACTCCGCCGCAGCCAGGCCAGACAGACGGAACAAAAAGCTGCAGTAAAAAGGAAGGAATAAGTCCTCTGTCCTTCTCGGAGTGTGCCTCCCCCGGCGAAGTGCTTGGCCACATGGGTTAGCGTCGGCGTGCGAGGCACTGAGAGACCACACAACTGACTTCTCAGGGGCTTCTGGCCAATGACAGGCTGGAAACAGGGCCTTTAGGGGTGCAGAAAAAATGACAGTGGCAGATAATCACATTAGCAGCCTCTCGGGTGCTTTTGTAACTTTTCTCCCGTAGCTCGGATGCTTCGGAAACCAACTTTGAGCAGTTTAAACTGGAAATCGTATTATCAACAGAAATCCATATAGGGGGGATTTTATATAACgccgtattttttttttctttctttctgatggCTGTGTCTGACAGTGAAGTGAGGTTAAGGTTGTATAGTGCAAGGTACTGTCTGGATTTAAAGATACGATAAGTGATAAGGAGGCCACTGGTacatttcttctgttcttatttCACCAACTCACGTGTGCCTTTTTTCAACATAACATCATTTTGTACAAATGCTAAGTGATTATAATAACAGCCTAGAGTGAGCAGAAAGGAGCAATTTTCAGTGGAAAGGGTGGTTTGGGGACATGGCCATGCATCCTCACTGCCACTAGGTGGGAGTAGCTGCCTGGCTGAAGTGACTGATTTTGATACTTGATCACACGGTGCCTTTCCCCTCGACTCAGATGAGCTTAAGCATCAtaagaataatgaaaatatagacCAATACAGTTATTAAATCTACTTCATTTGTATTCCTTTGAacatctttagtttttttttttaaataattagtgCTGTGCATATTTACTCTATACAAACAAGTAAGTAAAATGCAGTAATTATCCGgctttaataaatgtttgtcATGAGTGGCTTCTGGGCCCAGCTGAACTGGAAATGGTGTGCAACAGGTTTGCATAATACTGCTAGGAAATGCCAGAGAGCTGCAGCATTTGAATTTCATAACCATAAAGAAGAAGCACCTGTGTGAGGGTGGGACTGTGTAGAGGGGTCAGCAAACTGACAGAAGTTTTTCTTATCTCTCTTCCTTATGTTCAGAATTAAGCTCATCTATTCAGCTTTACATAGTTGTCTTCCTGAATTTTGCTTGCTGATTGCTGTGGCCATGGTGATGGAACATGAAGCAGCAAATTCATTGTGAAGGCTCTCCTGGTACGTCTTCGAGAAGCTTTGAAAACCTGTTTGTTCCTTCTCTACAAAGACACTCATGATGACTGATACCCTAAATcatcaaattaatattgttatgacttttttgtttagttgagTCTTGATTGTCACAGTCTGTGATTTCTCGGCAAGATGGTTCCTTTATTCATGATTTTCTCTCCGTTCTCGCAATGATATTTAACTTCCCCTCCCCCGACCCcaaccttttttcccctcagtctAGTGCAAAGTAACATGGTGTCTGGGATACCCGAGTGGAGAACAGCACTGCCAAGAATAAGATAACAACAGCACCCGGCCGTTCAGGCCTTTGTGCTGTTTTGTGCAAAATGGCGTTAAAAATACCATTGTCTTTCCATGCATACTTCCCCGTCACACTACCTTGTTCCTGGGTTGAGCTACACTTCCCTAAACCTGTACCTGTGTACAGATGACACATGACACTGACCTTCAGCTATATTTAACCACCGTGCGGCAGAATCTAGTTCATGTAAAGCGATTTCAGCCTGTCTCATAAACTGAGCAGTCTGAAATATTGTCTTTGAGCATGATTATATAACTGCTATTTCAgcaaaaagtgaaataaaatttGTTAcgcagtttttttgttgtattggtTATTTGTACAACGGTGCAGTAGGCTGTTTAATGAGTTCTTGGTGAAATTATGGATAACTGGTGGTGCACGTTTAGG

Function

GO: NA

KEGG:

id description
ko03008 Ribosome biogenesis in eukaryotes

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53911 lncRNA downstream 408638 26479611 ~ 26479850 (-) False AMCG00013258
TU53873 lncRNA downstream 521268 26366979 ~ 26367220 (-) True G43204
TU53862 lncRNA downstream 576344 26309353 ~ 26312144 (-) True G43194
TU53849 lncRNA downstream 630665 26254996 ~ 26257823 (-) False G43184
TU54119 lncRNA upstream 101954 26994372 ~ 26995304 (-) True G43400
TU54130 lncRNA upstream 153943 27046361 ~ 27046563 (-) True G43410
TU54132 lncRNA upstream 157150 27049568 ~ 27049842 (-) True G43412
TU54137 lncRNA upstream 163134 27055552 ~ 27059242 (-) True G43417
TU54146 lncRNA upstream 234362 27126780 ~ 27126988 (-) True G43425
AMCG00013276 mRNA downstream 55799 26830584 ~ 26832689 (-) True AMCG00013276
AMCG00013277 mRNA downstream 67511 26813858 ~ 26820977 (-) True AMCG00013277
AMCG00013271 mRNA downstream 238974 26647688 ~ 26649514 (-) True AMCG00013271
AMCG00013272 mRNA downstream 273904 26607072 ~ 26614584 (-) True AMCG00013272
AMCG00013260 mRNA downstream 300388 26567270 ~ 26588100 (-) True AMCG00013260
AMCG00013278 mRNA upstream 11396 26903814 ~ 26906966 (-) True AMCG00013278
AMCG00013280 mRNA upstream 107156 26999574 ~ 27001457 (-) True AMCG00013280
AMCG00013292 mRNA upstream 253229 27145647 ~ 27159340 (-) True AMCG00013292
AMCG00013295 mRNA upstream 399809 27292227 ~ 27292787 (-) False AMCG00013295
AMCG00013294 mRNA upstream 407409 27299827 ~ 27307855 (-) True AMCG00013294
TU53964 other downstream 331164 26556354 ~ 26557324 (-) True AMCG00013264
TU53711 other downstream 1371525 25516080 ~ 25516963 (-) True G43070
TU53641 other downstream 1721730 25163983 ~ 25166758 (-) False AMCG00013223
TU53623 other downstream 1810244 25075393 ~ 25078244 (-) True G43001
TU53519 other downstream 1859484 25025876 ~ 25029004 (-) False AMCG00013216
TU54172 other upstream 380811 27273229 ~ 27293073 (-) True AMCG00013295
TU54196 other upstream 676346 27568764 ~ 27569151 (-) True G43473
TU54344 other upstream 1175795 28068213 ~ 28072787 (-) True G43594
TU54456 other upstream 1574894 28467312 ~ 28467906 (-) True G43684
TU54700 other upstream 2360978 29253396 ~ 29254316 (-) True G43869

Expression Profile