RNA id: AMCG00013280


Basic Information

Item Value
RNA id AMCG00013280
length 402
RNA type mRNA
GC content 0.51
exon number 4
gene id AMCG00013280
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 26999574 ~ 27001457 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCAGATGACTTCAACCTGCAGGTGAAGAAGATGGCGCTGGCCATGGGCGCCTCGCTCAGCGATAAGGACATCGACCGCATGCCCAGGGAGATGCGGCTCCAAGGAAGTTTTAATTACAGCAAGTTCTTTGAGTACATGCAGAACTTCAAGACATCGGAGCAGAAGGAGGAATATATCAAGAAAGCGTTTCAGATGCTGGACAAAGACAGCAGCGGTTACATTGAGTGGAATGAGATCAAATACATCCTGTCCACGGTGCCCAGCTCGATGCCCGTGGTGCCCCTATCAGACGAGGAGGCCGAGGCCATGTTACAGGCTGCAGACGTGGACGGAGACGGCAGGATCGACTTCAGAGAATTCTCTGATCTGGTCAAACTGGAGAAGAAACCAAAGAAGTAA

Function

GO: NA

KEGG:

id description
ko04972 Pancreatic secretion
ko04974 Protein digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54119 lncRNA downstream 4270 26994372 ~ 26995304 (-) True G43400
TU53911 lncRNA downstream 519724 26479611 ~ 26479850 (-) False AMCG00013258
TU53873 lncRNA downstream 632354 26366979 ~ 26367220 (-) True G43204
TU53862 lncRNA downstream 687430 26309353 ~ 26312144 (-) True G43194
TU53849 lncRNA downstream 741751 26254996 ~ 26257823 (-) False G43184
TU54130 lncRNA upstream 44904 27046361 ~ 27046563 (-) True G43410
TU54132 lncRNA upstream 48111 27049568 ~ 27049842 (-) True G43412
TU54137 lncRNA upstream 54095 27055552 ~ 27059242 (-) True G43417
TU54146 lncRNA upstream 125323 27126780 ~ 27126988 (-) True G43425
TU54156 lncRNA upstream 156844 27158301 ~ 27158729 (-) True G43435
AMCG00013278 mRNA downstream 92608 26903814 ~ 26906966 (-) True AMCG00013278
AMCG00013279 mRNA downstream 107156 26888488 ~ 26892418 (-) True AMCG00013279
AMCG00013276 mRNA downstream 166885 26830584 ~ 26832689 (-) True AMCG00013276
AMCG00013277 mRNA downstream 178597 26813858 ~ 26820977 (-) True AMCG00013277
AMCG00013271 mRNA downstream 350060 26647688 ~ 26649514 (-) True AMCG00013271
AMCG00013292 mRNA upstream 144190 27145647 ~ 27159340 (-) True AMCG00013292
AMCG00013295 mRNA upstream 290770 27292227 ~ 27292787 (-) False AMCG00013295
AMCG00013294 mRNA upstream 298370 27299827 ~ 27307855 (-) True AMCG00013294
AMCG00013293 mRNA upstream 334833 27336290 ~ 27339310 (-) True AMCG00013293
AMCG00013297 mRNA upstream 497218 27498675 ~ 27508068 (-) True AMCG00013297
TU53964 other downstream 442250 26556354 ~ 26557324 (-) True AMCG00013264
TU53711 other downstream 1482611 25516080 ~ 25516963 (-) True G43070
TU53641 other downstream 1832816 25163983 ~ 25166758 (-) False AMCG00013223
TU53623 other downstream 1921330 25075393 ~ 25078244 (-) True G43001
TU53519 other downstream 1970570 25025876 ~ 25029004 (-) False AMCG00013216
TU54172 other upstream 271772 27273229 ~ 27293073 (-) True AMCG00013295
TU54196 other upstream 567307 27568764 ~ 27569151 (-) True G43473
TU54344 other upstream 1066756 28068213 ~ 28072787 (-) True G43594
TU54456 other upstream 1465855 28467312 ~ 28467906 (-) True G43684
TU54700 other upstream 2251939 29253396 ~ 29254316 (-) True G43869

Expression Profile