RNA id: AMCG00013281


Basic Information

Item Value
RNA id AMCG00013281
length 2316
RNA type mRNA
GC content 0.40
exon number 2
gene id AMCG00013281
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 26892596 ~ 26923139 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGTCACTTGACAGCTGTGAGGACGTAAACATGGAAGACAGAGGAGAAAGTATTAACACTGTATCTTACCGGACATGTTCTAATATCACGCTCTTAACCTAACCCACAGGGCAAAACATGTACATAACATCAGGTTCATATTAGAATGCACTGTTTAACTTTAAGGAACATGGGAGTGGCGTCTGGTCTTCAGAAGCTGTGCCTCTTCTCGCTGGGAGAGCTGAGACAGAGGCTGGTAGTGTCTCCACTGTGGCAGCAGAGTGCAGCAGCCCTGGCCCTCCACTATCAGACCCACAGGGGCCTCTGCAGcgacccccacccccagcccacCACGCACCCCCAACCCACCCCACACAGCACGGCCACAGATCACAGCCAGGCCCGTGTGGAGGCGCTAGGGGGTCCGGAGCGAGAGGACCTGGCCTCTCTGGGCTCCCCGCCCCCTCCACCCACATACTGCTGCATGAGCGGCTGCCCGAGTTGCGTGTGGATCGCTTATGCCGAGGAACTGTTGCAGTACTACAAGGATGGAGGGGAAAAGGCCCTGGCAGCCATCGAAGAACACATTCAGGATGAGAACATGAAGACCTTTCTAAAGATGGAAATCCGactaatgaaaaaaacataatgatgtGTGACATGCACGGTGTCTCTTGTGTGGTCGTGTTCTGGATTCACTGCAGCTCAATGTAGCTCTTTCACCCTAAATCCAGAAACCAGTAAACCCTTAGTACAGGTCATTATTAATTGTGAACATGATGAGATGTTACACCTAGAGTGGGGTAACGTTCCAGGGCATGGACCCTACACACCTTCTTTCTTTCCGTCATTTTATGTACAAGTCGAGACTTGGGATTCCTTTAATCACGCACAGACGTGGCAATGACACCCTGATtagattatattataataccacttgatattttttcataggtgtaaaacagttttttccattttctgtttcacCACACAAACACTGGGAATGTGAATTTAAACCATATAATCcaaaatattttgcagtttttacagtatttatttaagtctatgtgcagtattgtattttgaactgcattgtgttgtaaacattgtatgtgatttaaattaaagagttccatcacatttaaaatggattaGCAGTCCATCTGCAATggcaaaatgcagaaatataaaatagaaaCTATAAGGAAGGTTTCTGCACTCACTGGTCATGAATTCTCAGTACCATTTTGTaccatgttttttaattatgtgtctTACCACTAGGTGGGGTTTTAGCTTGTAAATTGAATGAATAATTCCCTTTACTTAACTGAGTAAATAATCTGTAGAAATAACTGGATCTATCAGTAAAATACAGACTAATCACTCTTGAGTACTGTAACCTAGTGTGTTAGGAAAGAACAATATTCTATAGTCATCTCTACAATAAtcaatttgtaataatataccAATACAATTGAAGGGATGGAGGTGTGACTAAATAGTGAATCTATCTTCACCTTTACTTTGCTGCATTTTTTTGTCTAGCAACCAGAAATAAGGTCAAGAAATAATTGATGGATTATCAGGCatattttataatcattttGTGCCTTTGTCCATTGTGCAGTGATTCTGAAGAGCATCTGTCACAAAGCTGTTCATTGGATGTCTGTTCAGTATTAATTATAGCCTTCAGAATAATGTCAATCCTATAATCCTATTAAACTATCTATACAGAAGAAAGATAACTCATGATATCTCTCCTCCATCACTTAATTTAGACGTGTTGCATTACGTTTCCACATTTTGATTCAAGTTAAAAGGGTTTTTGCTCTCAAGGAAAACTTTTTTCTGTAAGGTTTACATCTTTTAGCCACATATCACAGAGAATCGGGTATTAAGAGATCATAAtattgtcagtgtttttttaagaagtaAAGTCTTTGAAAAGGGGGTGGGAATTCGGGACACTTTTTAATACTGTTTACTTTAAAGCAGAGGAAGCTATAATTCAATACTCACTGTGAGGAAGATCCTCTTGCTGTAAAggaaaatcaatgtttttccTGTTACTATCAATCAATCTTATTTCCTTAATGAGTAAAATGcccataaacaaaaaaaggtgaGACTTTAATTGCCACGTGAATGTAACTCGGAGAACCAGACAAAAGGAGACGCTGTGAAATGCTCCTTTCAAGAATATGCTTTCCCTTGACAGTAACCCTGACATGAAGTGTGGTGAGTCAGCATGGAAAATTAAAGCCTGCGTCATGATATCAACAGTGATTAGGTGTCCTTTGCATTATACCAGTCTGACATTATCTGATCTGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53997 lncRNA upstream 107035 26784953 ~ 26785561 (+) True G43303
TU53895 lncRNA upstream 414052 26449384 ~ 26478544 (+) False AMCG00013265
TU53875 lncRNA upstream 495891 26367795 ~ 26396705 (+) False AMCG00013257
TU53853 lncRNA upstream 633614 26258710 ~ 26258982 (+) False AMCG00013255
TU53839 lncRNA upstream 731457 26153236 ~ 26161139 (+) True AMCG00013251
TU54035 lncRNA downstream 2146 26897509 ~ 26904963 (+) True AMCG00013286
TU54122 lncRNA downstream 115009 27010372 ~ 27010651 (+) True G43402
TU54159 lncRNA downstream 374665 27270028 ~ 27417787 (+) True G43438
TU54325 lncRNA downstream 1173283 28068646 ~ 28072799 (+) True AMCG00013317
TU54444 lncRNA downstream 1494326 28389689 ~ 28389960 (+) True G43673
AMCG00013290 mRNA upstream 21693 26862758 ~ 26870903 (+) True AMCG00013290
AMCG00013275 mRNA upstream 35960 26854424 ~ 26856636 (+) True AMCG00013275
AMCG00013273 mRNA upstream 153762 26737554 ~ 26738834 (+) True AMCG00013273
AMCG00013274 mRNA upstream 166157 26725234 ~ 26726439 (+) True AMCG00013274
AMCG00013267 mRNA upstream 283733 26588755 ~ 26608863 (+) True AMCG00013267
AMCG00013286 mRNA downstream 5207 26900570 ~ 26901377 (+) False AMCG00013286
AMCG00013285 mRNA downstream 13428 26908791 ~ 26920057 (+) True AMCG00013285
AMCG00013282 mRNA downstream 29203 26924566 ~ 26928580 (+) True AMCG00013282
AMCG00013284 mRNA downstream 33896 26929259 ~ 26963188 (+) True AMCG00013284
AMCG00013289 mRNA downstream 68325 26963688 ~ 26981369 (+) True AMCG00013289
TU54005 other upstream 80981 26808164 ~ 26811615 (+) True G43309
TU53939 other upstream 352547 26524826 ~ 26540049 (+) True G43263
TU53847 other upstream 634754 26254979 ~ 26257842 (+) False AMCG00013255
TU53706 other upstream 1370915 25520167 ~ 25521681 (+) False AMCG00013236
TU53419 other upstream 2122448 24768424 ~ 24770148 (+) True G42858
TU54155 other downstream 262939 27158302 ~ 27158721 (+) True G43434
TU54169 other downstream 490302 27385665 ~ 27415286 (+) True AMCG00013298
TU54201 other downstream 693776 27589139 ~ 27590818 (+) True G43476
TU54319 other downstream 1038711 27934074 ~ 27935938 (+) False AMCG00013310
TU54454 other downstream 1588910 28484273 ~ 28488783 (+) True G43682

Expression Profile