RNA id: TU54034


Basic Information

Item Value
RNA id TU54034
length 2302
lncRNA type read_through
GC content 0.41
exon number 3
gene id AMCG00013281
representative False

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 26892596 ~ 26923139 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGGACGTAAACATGGAAGACAGAGGAGAAAGTATTAACACTGTATCTTACCGGACATGTTCTAATATCACGCTCTTAACCTAACCCACAGGGCAAAACATGTACATAACATCAGGTTCATATTAGAATGCACTGTTTAACTTTAAGGAACATGGGAGTGGCGTCTGGTCTTCAGAAGCTGTGCCTCTTCTCGCTGGGAGAGCTGAGACAGAGGCTGGTAGTGTCTCCACTGTGGCAGCAGAGTGCAGCAGCCCTGGCCCTCCACTATCAGACCCACAGGGGCCTCTGCAGcgacccccacccccagcccacCcccccccccccaccccccgaaaAAAAACGTAACTTTTTATGGATGAAACGCAACTGTTAATCTGATTTATGAAGAAATTAAAGGCACTTGATTTTTCAACCCCTCCTTCAATGTAATTGTCATGCTTACAACCACTTCCAATGATTTCCAGCACTTGGTTGCCTTCATATTGGTCTTTTGATCTGAGATACAAAAAGATATTAAGCTTAGAGTGTCAAGCTTGGATTATTGTTGCTAGTTTGAGctatttttctaattttgcCCTCCTTTTATGTCCAGATGAGAGTGATCTGTTTTTAGCTTTTACAGACCTAACTGACCTGCAAACTCATGAGATTTGATTTGGTGTTAGAGGTAATATTACCAGATTACCTAATTCTTTCCACATTCcctttttcaaaaatgtgttgtaATCTGCATCACCTCACCGTTGGCTGCCTTGCAGAAAAGCagggttgtgttttttgtcCGCACATGCTGTCACTCCATAATGGTGTCTATTACCAAGAGAGCTAAATACACTCGACTGGCGGCTCTCCAGAGCGAAACAAACATGGTGAAAAGTTTTCCTGCTTCCTATTGATCTTAATGAGGAGTTGAACTTTCTACGTGTTCAAAGAGTTGGAGGTTAATGGTTAGAAGGGTCGCAAACGGTTAATCTGAATGGTTCATGGGAAGGCCCTCTGAAGGCCAGTATGCTTATTTTGCAAACCATGTTGTTCAGCCCATATGGTTGGACAGGCGACTGGCAAATAACTGAACCAGGGTCATCCAGACCTTTATTCCTAAGTGCAGAACCAACTGCCACCAAGCTTTGTATTCCctcctatatatttaaaagtgaacaacctgtattgatttgttttctcagtCCCACcaggtttttttaaatttattttatttaagagtTTGTCATGCAATTGCAGCACTAGAAAgaattaatttatcattggcactaGCAGGACCTGTGTTTATGTACTGGATAGGCATGGAGCTTCTAGTCAAGCAATTTGAAGGCAATAGCGTTTCGGCAACATTGCCCCTCAGACTAATACCGAAAGCATTCTGAGTTTAATTGACGGCAGATCTTTACCTTTGGATTTTATCTGAATCCTTCCTCTTGTTAATGGGATTCATTTCAGTTTAGTATAGTACTTTGTACTTTGTACGTGTACAACCGCTCATTGGCAAGTTACAGTTTCACTACAAATTGTTAACTCTGCctcattgaaaatgaaaatgaaagtagTGGAGAAGATCGGGGGTGGGCTGCAGATTTTGtggtgtgttattattattttttttatccccaAGAAACAAAGCTTCTTAGTATCtataaagtttgttttgtttttatacttaaTATTCTtaatgctttgtgtgtgtgttggttcaGAAACAAGCACAGGGAGCTGTGTGAATGCACTATGAGTATCTTTATGAGAATAGAAGAAAGAAGTTAAAATAAGATGAGAACGATTGATGGAAAAaagtaacaacaaaaaagaggTTTCCTTTTCCGTGTTCTGTTATCTAGATCCTTATGCTTTCTGTACGTGAGTGGGAATGATTTGTACATTGGGTAACCGCTGGTGAATGATAACAGTCAAGATTGAACTTCTTTCACTGTGGCGGATTGAGATCCTGGGGCTTGTGAGGTGTCCCTGAAATGACTGTAACCATCTCATTCTCTGGCTTGCCAGCGTGCAGTATGTTGTTGGGTTTGAAGTTTTAATTACAGCCCTGCCAGTGAAAActctaaataaaatcaaaggaaCGATGTCTTGTCTGCCTACTTCTTTTCCCCATGTTGATCGATCATGTTTGCTCATGACAGGACTCCCCTTCAGATTGATCAGGAAAACGAGATTTGGAATACAGCTTAATTTCCTGAAATCAGATTTCTGATTGATCAAGCGTGTATGGTATTTTATGGTCTGCTTAAGCATGTACTTAATATTGGACTTTTTCCTATACTTcgcattaattg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53997 lncRNA upstream 107053 26784953 ~ 26785561 (+) True G43303
TU53895 lncRNA upstream 414070 26449384 ~ 26478544 (+) False AMCG00013265
TU53875 lncRNA upstream 495909 26367795 ~ 26396705 (+) False AMCG00013257
TU53853 lncRNA upstream 633632 26258710 ~ 26258982 (+) False AMCG00013255
TU53839 lncRNA upstream 731475 26153236 ~ 26161139 (+) True AMCG00013251
TU54122 lncRNA downstream 87233 27010372 ~ 27010651 (+) True G43402
TU54159 lncRNA downstream 346889 27270028 ~ 27417787 (+) True G43438
TU54325 lncRNA downstream 1145507 28068646 ~ 28072799 (+) True AMCG00013317
TU54444 lncRNA downstream 1466550 28389689 ~ 28389960 (+) True G43673
TU54481 lncRNA downstream 1757671 28680810 ~ 28682174 (+) True AMCG00013336
AMCG00013290 mRNA upstream 21711 26862758 ~ 26870903 (+) True AMCG00013290
AMCG00013275 mRNA upstream 35978 26854424 ~ 26856636 (+) True AMCG00013275
AMCG00013273 mRNA upstream 153780 26737554 ~ 26738834 (+) True AMCG00013273
AMCG00013274 mRNA upstream 166175 26725234 ~ 26726439 (+) True AMCG00013274
AMCG00013267 mRNA upstream 283751 26588755 ~ 26608863 (+) True AMCG00013267
AMCG00013282 mRNA downstream 1427 26924566 ~ 26928580 (+) True AMCG00013282
AMCG00013284 mRNA downstream 6120 26929259 ~ 26963188 (+) True AMCG00013284
AMCG00013289 mRNA downstream 40549 26963688 ~ 26981369 (+) True AMCG00013289
AMCG00013291 mRNA downstream 58536 26981675 ~ 26998680 (+) True AMCG00013291
AMCG00013283 mRNA downstream 113476 27036615 ~ 27058921 (+) True AMCG00013283
TU54005 other upstream 80999 26808164 ~ 26811615 (+) True G43309
TU53939 other upstream 352565 26524826 ~ 26540049 (+) True G43263
TU53847 other upstream 634772 26254979 ~ 26257842 (+) False AMCG00013255
TU53706 other upstream 1370933 25520167 ~ 25521681 (+) False AMCG00013236
TU53419 other upstream 2122466 24768424 ~ 24770148 (+) True G42858
TU54155 other downstream 235163 27158302 ~ 27158721 (+) True G43434
TU54169 other downstream 462526 27385665 ~ 27415286 (+) True AMCG00013298
TU54201 other downstream 666000 27589139 ~ 27590818 (+) True G43476
TU54319 other downstream 1010935 27934074 ~ 27935938 (+) False AMCG00013310
TU54454 other downstream 1561134 28484273 ~ 28488783 (+) True G43682

Expression Profile