RNA id: AMCG00013283


Basic Information

Item Value
RNA id AMCG00013283
length 8816
RNA type mRNA
GC content 0.47
exon number 14
gene id AMCG00013283
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 27036615 ~ 27058921 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTGGAGGGTGGGGTGCATGTCAATGATGGTGCCCCCTTAAGTGAGCTGTCCTGGTCCTCCTCCCTGGCTGTGGTGGCTGTTTCCTTCTCTGGGCTCTTCACCTTCATCTTCCTCATGTTGGCCTGCCTGTGCTGCAAGAAGGGGGACATCGGCTTCAAGGAGTTTGAGAACGCTGAGGGCGAGGATTACCAGACCGAATTCTCCACTCTTGGCTCCCCTGTCTCACAGAACGGACCTGAAGTCTATATCCTGCCCCTCACTGAGATTTCGCTTCCTGTGTCAAAGCAGCCTGGAAGATCAGTCCAGCTCCTCAAGTCGACAGACCTGGGCCGACACAGCCTGCTGTACCTGAAGGAGATTGGCCATGGCTGGTTTGGGAAGGTGTTGCTGGGGGAAGTGAATGCAGGCCTCAGCACCACACAGGTGGTGGTGAAGGAGCTGAAGGCCAGCGCCAGTGTGCAGGATCAGATGCAGTTTCTGGAGGAAGCTCAGCCTTACCGCGTTCTCCAGCAccctgcgctcctccagtgcctgGCCCAGTGCTCTGAAGTCACACCGTACCTGCTTGTCATGGAGTTCTGCCCCCTGGGAGATCTGAAAGGTTACCTTCGGAGCTGTCGGGCTGCCGACTCCATAACCCCCGGCCCTTTGACCCTTCAGCGAATGGCGTGTGAGATTGCCTCTGGCCTGCTGCACCTGCACAAACACAGCTACGTCCACAGTGACCTGGCCTTGAGGAACTGTTTGCTGACTGCGGAAGTGACAGTGAAGATAGGAGACTATGGGCTCTCCcataacaaatacaaaGATGATTATTTTGTGACATCGGATCAGATATGGGTACCTCTGCGCTGGATCGCCCCAGAACTCATCGATGAGGTTCATGGGAACTTGCTAGTGGTAGACCAGACAAAGCCCAGCAACATCTGgTCCCTGGGAGTGATGATCTGGGAGCTGTTTGAGTTGGGGAACCAGCCCTATCGTCACTACTCTGACAGACAGGTGCTCACTTATGCTGTAAAGGAGCAACAGCTGAAGCTGCCCAAACCTCTGCTCAAAGTATGAAGTGATGCAGTTCTGCTGGTTGCAGCCTGACCAAAGGCCGAATGCAGAAGAGGTGCACCTGCTTTTGTCCTACCTGTGTGCCAAGGGGGCCAGCGAGGCAGAAGAAGACTTTGAGAAGCGCTGGAACTCCATGAGGCCGAATGCGGGCAACAGCGGCTCTCACAGTGCCAGCGCTTCTGTGGCAGAGCTGccctcatcttcctcctcctcttacCCCCTGCTGGAGCACTTCGCGGTGGGTGAAGGCTTCCACTCGGAGTCGGGGGACGATATTCTGACGGTCACGGAGACCAGCCGGGGACTGAACTTTGAGTACAAGTGGGAGCAGGCTCGGCCAGAGCAGCACTTTCATTCCTCCTCAACCAGCGGTGCCCTGGGTCATGGCAATCCCCAGTACCAGGATATCTATTACCCTCCTGGCAGTGGGGTGAATGGCTGTGGCACTGGGGGGCTAACTCTGGGTGTTTCTCCTTCTTACTATGATGCCAAGCAGCTGCACACCCCAGGTGTGGTACCCGTGCTGAGTGCCCACAGCCCCTCCGTGAGCAGTGAGTATTATATCCGCATTGAGGAGCCAACCGAGTGCAATATAGACCTAGACTATACCATGTGCTCCTACAGCCCAGAGTTTGATGGCAGCAATGGCAGCTTTATCGGAGGAAGTGGGGACTCGGGAAACTGTGTCAACTGCCCTCCTGAAGCCCAGCAAAACTCATATTGGTCTGCAGACGCTCATAAAATCAGTGCCTATGATTCCGATACCAGCCCAGCCATTTCTTTAACCATGGAGCCTCTGCTGGGGCAGGTGTCTAATGCCAGCCCCTTGGAGCCCTGGGAGAGTGGGCAGTACTTCTCTTACaaagtcagagagagagagcagggctACTACTATGAGCATTCTCCCTCAGATGGGGCAGACCACTACCTTCTAGAAGATGCTTCAGATGCCCATCAGGAAAGTTGGGGGTCGCGGAGTCTGCGTCAGGCACTGGGGGAGTTAGAGAATCCTCTGGGCATTTCCCCATCCCTCGGTAGCCCCCAGCAGCTCTACTGTGAACCTTACCTAGAAAGCAGCCATGAGCCCATTCTTAGCAAAACGTCAGCGGGCGAGTGCTACTATGACATGATGGGGTCCATCCGGAAGACCATGACAGGGTCAAACTCCATAAGAAGCGAAATGGAGAGAGAAGAAGCTCGGCTGTTTGTGGGTCGCCAGGACAGTGATTTTGAAGAGGAGGACTTGTTTATGGAGAGACAGACTAATAACTGGACATCCAACAGCTCTGCCAACAATAACAGTGTGAACTCTGCCCGAAGGCCTGGAACGAGTACCAATGATGCTTATGTAGATTTCCATTTCACAATCCCTTCTGCAGATATGGAAGATGCATGGCGAGATAATGGATCTAAAGAAAATCTATCATTGGCCTCCAAACCTTTTACCTACCTAGAGGCCATAGATAAAAGTGGCTGTATTTCCCTGAATAACCAACACAAACTTTTCCCATCAGATGAGtgcaatacttttatttatttgtgccaTGAAGGAGGTGATGGGGTATCACCCCACAGAACCAAACAGACTGTCGAAGAGAATGAGTTCATAGATCCACTATTGGGATCAGTGGTTCGGAATTACCAATTACCtgaatatattaaagaaaaaaaagttgaagtTCAACGAAAGGAAATTAGTGAAACTCCATCATCTTTACCTGTGGGTGCAGCAGTAGGAAGAACAGAGCTGCCAGAAATGTGGCTGAACCATGAACTAGGTAAAAATAATCCCCTCTCAGACCAGACAGAGCAACATATTGACATTGACCTACTGCTTGGTAGAGAGCATTCTGAAAAggagggagaaaaggaaaaagagttTGAACTTACAGATATTTTACAAAAGCCAGTCGCCTGTAGCTCCCCTGTCCAATCTGAAAAGCCACCACTTCCTGATATGGCCCCCAGTACCCAGTCAGAACCAATCTCAGAGAACAGCCAGACCGCAGACAGTGGAGTGGAGAAAGGCTATTCCAGTATCAGTTTTGTCGAGATTGATGACTGCAGTGATGATGATGTAACAGATGTCACCTCAGGTATCTTCACAGATTTCCCAATCGATTACGCTGATATAGGAGATACTGTCCCTGCTTTCAAGTCCCTCCAAAAGCAAGTAGGGACTCCGGACTCCATAGACTCCCTTGACCTTCCCTCCACCACAAGCTCCTGTGAGGCATTCAGTCCTGCTACTTTCCGACCCTCCAGCCAGCCTAAAGCTCTGGACAGTGGCTACGACACTGAAAATAATGAGTCTCCTGAATTTGTATTAAAGGAACCTCATGAACCACGAGACCCCGAGGGCTTTGCACAGACCCTGGAGAAGCCCTCTCTGACTGTGAGTTTAGAACTGGAGGACACACACTCAGAGACAGGGATAGTAACAGAGCCCGGAGCTGATGAAGGGATAGATGCTGCCTTGACCCTGTCAACATCCCACGGTACAGAGCTGGAACTGACATGCCTGAACGAAAAGAATCCGTACAGGGACTCCGCCTATTTCTCGGACTATGATGCAGAGAACGAGAAGTTTTCCCGGGACGAACGGGACGACTTTCAGGAGAAACTAGAGGAAGATGATTTTGGTCAGGAGGCTCAACGGGAGGATCTTGCCAGGTCCACAGAAAAGGAAGAGCTTCAACCACTCATGGTGTCAAATCAGCCACAGGAAGACCTTACAAAGCAACTTGCAGGGACAGAGCCCCTCCAAGGTAATCATTCAGACTGTGAACTAGGTGAGCAGAAGGAAGTCAACAATCTGGACATAGACAAAGATACAACCTTACCCAGAGGAGAGGTCCCAGAACCAGAATTAAGTGTTTCTTCATCCACTCCTGTTATTTCTTCACTTGCTCCATCGCCTCCAGAGCTGGGGGCCTGTTTTACAAAGCAGGCCTCACAGGACGAAGGCCTGGGTCTGGATTCGGAGCACTCTGGGGAGGAGCAGTCTTCCGAGTGCTCTACCTCTACAGTATCTGAAGGGTCGGTACAGCAGGAGCCCTCATCCTCAAGTGATGGAGTACAAGAGTTTAATGGCCCAGAAGATGTGCAGGCTGAGACTTTGGCCTCAGAGGTTGGGGGAGACTCTTCAGATAGCCTCAGTGAGTCAAAGGATGAAAGGGAGGAAGGGGAGTCCACTGCAGCCGTAGTGGACTCCACTGATCTCTTAGAAGAGGATCACCAGCTAGCCCCACAAGAAGAACAAGATGCCCAGGAAGAGGAAGTCCAGGGGTTCCTTGAGCGAACAGAGACTGCTGGGAGTCCCGCgccctcttctcctcctccagaacTCCGGCCAATGGAGGGCAGAGTGTCACCTGCGGACGGGGAGGAAGCGGACGAGGAGGACGGGGATTCGGAAGACAGCGAGGAATCGGACGAGGAGCTCTGCTGCTACAACATCCAGGAGCAGAGCGAGGAGAGTGAGGAGGAGTTCCCTGCAGTGCCCATCGTGGTGAGTGACAGCAGTGAGATGCGGAACCTGCGCAGTCTCCTGAAGATGCCCACCTTGCTCACCGAGTCCTTCTGTGAGGAGCTGGATCGCAAGAAGAAAGCTGTCTCCTTCTTTGATGATGTCACTGTCTACCTTTTTGACCAGGAGAGCCCAACGCGGGAACTGGCAGAACTTAGCTTCCCTCAGGGGGCGGAGTCCAGTGGGCGGGGTTCTGACTGTGCGGAGCCACGCCCCCAGGAGAGGGTCAGCGCCTCGGACGACTCCTCAGATGGAAACGTCTCAGAAGAGAgTGGAGGTTTTGAATGGGACGATGATTTCCCATTGATGCCGGTCTCCTCCTCTATGATGCCCCCCCTGGATACTCCTGTGACCTCCGGCTTGACCACACTGACCCCTGAACCCAAACCGATGGGATCCACAGTGCAGTACTCCCGCTTCACTGTATCACCCTCCAGCGTGTCCCGATTCTCCATCACACACGTGTCTGACTCCGACATCGACTCCGTGGGAGGGAGCAGCgaagatggggagagagagtgaaccACAGATCAAGGGAGGGAGTCAGCATCCCAGGCCCTTTCTGTACAGACTGGCCTCAGCATTGAAGGGGAGGGGGGTCCACCTCGGTCCCGGACCCTGGACTGTGCCTCTTCATGCTCGTGTACACAAGTGATCCCAAGCCCATGTTGTGCTCTCAAAGGGCGGGAGTGTGGGGGTTACAGACACTCAAGAGTGCAAAAGAATGAActgaaagcagaaaacaaacaaaaaaatcagaagagaaaaaatgaaatctatatataattatataaaatatatatatgatgaatatatatatatatatatatatatatatataacttatatGCAGGTAACTTAACGTGTCGCAGAACATTAAAGCTCATttgtaacatattttttttttcctttgacgagagcaacaataacaaaaagaagAGCCACACTGAGTTTACTTTCACAGCTGCACACGATCACTTCATCAGCTGCTGGGGAACATCGCTGTACCTGTCGGGCACACCCAGGCCCGGCACCAGACTGTTACAGCCAGCCATTCAGCTTGGCAGCTATTCAGTTCGACACCCTACGCGCCCGTCTCACTTTAGGAACCGGCAGAGGACACAGCCCTGACCCGGAGATCTTGGGAGAAGTGACATTTCCACAGTGGAAAGATTTGTGTTCTCTCTGATGACTAGGAGGTGCCAAATCTCGCCGGTGTCTCTTCCAGATTTAGTAGTCTTTCTACGGATGATTATTGACTCAAAGGGGAAAGTTTTGTTATTGATAGCTACAGAAATTCTGCAGTCTGACTTAAATTGAGTCCAAAGTCCCAAGTGAGGAACACTCTGATGTTGGAGTAAAAGTAGGTTTGTTTGCCAAATGATGTATTACTTTGCATACCTTTGAGAGAAAATGAACCAGAAGAAGCTGTAGTCAGTTTAAAAGCTTTCCAGTCTGTGCGTATTAGAGGCAGAGAAAGACTTCCAGAAGAAACTGTTCAACATTTGCTGAATGTGGTTCCTTTTTCAGGAACTCTTCTGTGAATCAAATTGGGAATACTtgggtaaaataatatatttggtaATACCACAGTATTTTTTCATAGGTTAAGGATAGTGTGTGGGATTTGATATTCCTGCCTTATTTTTCTCGCCTTAGTTTGAATTGTGTATTCCCAAATGTTGTGATTATTTCCTGTGGTTTCTGAGTAGTCTGTGATTCCCAACACTGGTTgcataaaagaagaagaagaaataccACAAGAAGAGACTCCAGGAATTCAGCTTTCCCCAACCTCGACTGGATCCAGAGTGGTCAGGGTGGAAACGCATTTACAGACACTTTCAATACCTGACCTGTGGGCCACAGGGTGGATTGGGACAGGCAGTATGGACTGGTTCCTGGACTTCACTGTGGCTCCTGAGTCAGGCTTTGCATGGGTTGAATTCAGAACCCGTTCCAGGTTTTTCAATAGGATAGCTTTCTGTCATGTCATTTGCTTAAaggcagaaacaaacaaacaaacaagaaacatctAGTGCCCTCACTGTATCAAGTATCGCTTTTTATCACAATTTGAGTGTTAGTTTCTACATGAGGGAATCAAATGAGTTCATGTCAGAATCAGTGTTTTAGATACGCTGTTCTggcatattgttttaaaaccaatacACTCCACATGTGTGTCACAGACGAGCTGGAATCTCAACATTATTATTcacgtttgtttacttttttaggATCCCCAAACAGACACagtacagattattttattcagaatCAGAGATGATCCCTCTGATACATATGGCCTTCCACCTTTGTCCcaagttaatgtatttttactttaaattgatGTAAACTCTCTCCACTCAGAAggttaaaatgtaaacttttaattcCACAGAGAGAAATGCCACACAGCCTCCACTCCCCTAGTTACACTCAAGTAACGCGGTAACTGTGCCGAGGTTGCTGTTCTAGTATTTATTCTAcccacaaaacaacaatatgtatttctgtttgccttttatgGACTTCATATGATGTAATAGTTTAGGATAGAAGACGTTTAACTGCAGTCTATactatttttgtaaaaaaagaaaaagaaaaaagataagaaaatgatttgaaaatgatATTTATGGAAACAAATATCCAATATTATAAGTTCATTGTTGCCAAAGAGATGTAACAAATTTAAATGGCACACTGGCTTatgggatttttttattgtgtaacaGTATTAAACAGACTTAGTTTAGTTTTCCTCTGCCACCAGTTATGAAAACATACTGATTTAATGTCAGACTGGTACCTAGTAGTGTCACACAATAGGAGTTTGAATTTATTACCTCCATATGACATCACGCAATGCCACATCAAAACTGTGTCCTTACAAAGTGATGCCATAGCAGCAAAGGTTGTGGATAACAACCCTTGTTTGTGCAAAGTAACACTGCTGAAATTTTCAGATTAAAGTAATACTGCATAGAGATAGATAGGGTTTGAATATTATGATTCCCCATGGCCTAAAACAGtagtaaatatgtatgtatttatgtatttatttattcaaagatttatttattttattgttatatgtATTCCTTGGTTTAGgcactgattaaaaacaaagactgctAAATTGAGAAACGTGCTCGACggctgaaatgtaatttgttcgATATCTGTCTTGTCTGTCTGAGAAAGGTGCATTTTCTGAATCTGAAACTCGCTTTCACTGCTGTGGTACAGAGATGTTTTGTGAGTTTAAAAACGACACAAAAAACTTTGCACTACACACTGTGAACTTTTTACTTTTCCAACATTTCAGATATCTACGTCTtctactttttgtttgttttgcattactCCTCCCTAGAAAGCAAAGCGGAATTTGTTCCCATATTCAGGTAATTCCCTAAGATGTATTATGGAGAATTTCTGAATGGCCTCAGCCCCCTTTAGGAgacaagaaaatactttttttaaaccagCATAGTGGGCGTAGAGAAGTGAATGTCTCACACTGATTCATATAAGCATCCAAAGAAGTGAATGTGAGTGGGCTGAGTTGTAGCTATAATAGTCCAGGTGCTGGGCTGTTTTCTGTAAAACGTGTGCTTAGCATGTCGACTGTGCATGCCATATAAACACAGAGAGGCAGTAAGAAATATGGGAATGACGTATACATATGCACTGAACTGCCATTGCATTTTGTTGTGGTGATGTTAATTAAAGCCTGCATATTACACAGGGCAAGGGAGGAAGGGTGGCTGATTTACGCTAGCTTTAATCACAAcctgcttgttttgttttgcatcatCATACCAAGGATGGATGTCTGTTACAAAGAGCTTTGGTCATAGCCTTCTttgtagatttaatttatttaaactgaaaaacgGACATTCATTCTTCATATAAAACCACAAATTAAATCACAACAAACCTGCCTGTAACCCACGCCCCTTGGACAGGGGTCCTCTGTGTGCGCCAAAATCTGTGTATTCTCAGACTCTGTACCCAGGCCTTCTCTTGTTCTCTTCTCTTGCACCCACATTTACTTGACCCTAATGCACCAGAGACATGCATATCTTTTCTCATGTGCTATTTCTCCTGGTTAGCTGTATCACtcctttcctgtttttaatatattgtccAGCACTTTGAAATGCCTTGAAATGAAAGACTATTTAaaacactgcccccccccacc

Function

GO:

id name namespace
GO:0016301 kinase activity molecular_function

KEGG:

id description
K17480 AATK, LMTK1; lemur tyrosine kinase 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54122 lncRNA upstream 25964 27010372 ~ 27010651 (+) True G43402
TU54027 lncRNA upstream 106362 26872821 ~ 26930253 (+) True G43326
TU54034 lncRNA upstream 113476 26892614 ~ 26923139 (+) False AMCG00013281
TU54035 lncRNA upstream 131652 26897509 ~ 26904963 (+) True AMCG00013286
TU53997 lncRNA upstream 251054 26784953 ~ 26785561 (+) True G43303
TU54159 lncRNA downstream 211107 27270028 ~ 27417787 (+) True G43438
TU54325 lncRNA downstream 1009725 28068646 ~ 28072799 (+) True AMCG00013317
TU54444 lncRNA downstream 1330768 28389689 ~ 28389960 (+) True G43673
TU54481 lncRNA downstream 1621889 28680810 ~ 28682174 (+) True AMCG00013336
TU54482 lncRNA downstream 1621889 28680810 ~ 28682174 (+) False AMCG00013336
AMCG00013291 mRNA upstream 37935 26981675 ~ 26998680 (+) True AMCG00013291
AMCG00013289 mRNA upstream 55246 26963688 ~ 26981369 (+) True AMCG00013289
AMCG00013284 mRNA upstream 73427 26929259 ~ 26963188 (+) True AMCG00013284
AMCG00013282 mRNA upstream 108035 26924566 ~ 26928580 (+) True AMCG00013282
AMCG00013285 mRNA upstream 116558 26908791 ~ 26920057 (+) True AMCG00013285
AMCG00013287 mRNA downstream 52929 27111850 ~ 27117437 (+) True AMCG00013287
AMCG00013288 mRNA downstream 71243 27130164 ~ 27140599 (+) True AMCG00013288
AMCG00013298 mRNA downstream 327170 27386091 ~ 27386627 (+) False AMCG00013298
AMCG00013296 mRNA downstream 489884 27548805 ~ 27569295 (+) True AMCG00013296
AMCG00013299 mRNA downstream 533854 27592775 ~ 27609468 (+) True AMCG00013299
TU54005 other upstream 225000 26808164 ~ 26811615 (+) True G43309
TU53939 other upstream 496566 26524826 ~ 26540049 (+) True G43263
TU53847 other upstream 778773 26254979 ~ 26257842 (+) False AMCG00013255
TU53706 other upstream 1514934 25520167 ~ 25521681 (+) False AMCG00013236
TU53419 other upstream 2266467 24768424 ~ 24770148 (+) True G42858
TU54155 other downstream 99381 27158302 ~ 27158721 (+) True G43434
TU54169 other downstream 326744 27385665 ~ 27415286 (+) True AMCG00013298
TU54201 other downstream 530218 27589139 ~ 27590818 (+) True G43476
TU54319 other downstream 875153 27934074 ~ 27935938 (+) False AMCG00013310
TU54454 other downstream 1425352 28484273 ~ 28488783 (+) True G43682

Expression Profile