RNA id: AMCG00013285


Basic Information

Item Value
RNA id AMCG00013285
length 1854
RNA type mRNA
GC content 0.55
exon number 16
gene id AMCG00013285
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 26908791 ~ 26920057 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCATTCGAGTACAGTCCCCTGATgggatgaaaaaaatatttgcaactAAGCGAGAAACGGCTgcactgtttttaaagaagGTCGCCAAGGAGTTTGGCTTCAGTACCAACGGCTTCTCCATTTACCTGAACAGAAACAAGACTGGAGAGATTGTCTCCCAGAACAAATCACTCAGTCTCCTCAAGATCAAGCATGGAGACATGCTGTATCTGTTCCCCTCCGGAGTCCCTGGACCCTCTGGTGAAGTTATGGATGTGGTGGCTCCTCtggcatcatcatcatcttcttcatcatcatcatcctcatcatcgCTGTCACGAGGTCAGAGTGGTCCGCAAGTCGTGGAAGATGAGATCGACCAGTACCTGGCCAAGCAGGATGGCAAGATCTACAGAAACCGAGATCCCCAGTTGTGTCGGCATGGGGTCATGGGGAAGTGTGTGCACTGTGTCCCCTTAGAGCCCTTTGATGAGGATTACCTGAACCACCTCGACCCCCCAGTCAAACACATGTCATTCCACGCCTACATTCGCAAGCTCACCGGAGGCGCCGACAAAGGGAAATTCGCGGCCTTGGAGAACATCAGCTGTAAGATTAAATCAGGCTGTGAGGGGCATCCGCCCTGGCCGGAGGGCATCTGTACCAAATGTCAGCCCAGTGCCATCACACTAAACAGACAGAAATACAGACATGTGGATAACATCATGTTTGAGAATCACACCATCGCAGACCGCTTCCTGGACTTCTGGAGGAAGACGGGCAACCAGCGGATGGGCTATCTCTACGGGCGCTACACCGAGCACAAAGACATCCCGCTGGGCATTCGAGCCGAGGTGGCTGCCATCTATGAGCCCCCACAGATCGGTACTCAGAACAGCCTAGAACTGCTGGATGACCCGAAAGCTGCCACGGTGGAAGAGATTGCCGCTAAACTGGGCCTTTGTAAGGTGGGGTGGATATTCACAGACCTAATGTCCGAGGACACCAGAATAGGTACTGTCCGGTACGGCAGACACAAGGACTCCTATTTCCTGAGTGCGGAGGAGTGCATCACGGCCGGAGATTTCCAGAACAGACACCCGAACTCCTGCCGCCTTTCTCCCGACGGCCATTTCGGCTCCAAGTATGTCACCGTGCTGGCAACAGGTGGCCCTGATAACCAAGTCCACTTTGAGGGGTACCAGGTGTCCAATCAGTGCATGGCGTTGGTACGAGACGAGTGTCTCTTGCCGTGCCGCGACGCCCCAGAGCTGGGCTACGCCAAGGAGTCCAGCACCGAGCAGTACGTACCGGACGTCTTCTACAAGGACAAAGATAAATTTGGCAACGACATTACGTATTTAGCACGGCCGTTACCTGTGGAGTACCTGATCATCGATATCACCACCACCTTCCCTAAGGACCCAGTTTACACATTCACATCGACGCACCGCTTCCCGATCGAGAACCGTGACGTGCTAGGAGAGACACAGGATTTCCACAGTCTAGCAACGTATCTCTCCCAGTGCACCTCCACTGTGTTCCTCAACATCGTGTCTGATTTCCATCTCCTGCTCTTCCTGGTCACCAACGAGGTCATGCCCCTCAGGGACAGTATCGGGCTCCTGTTAGATGCAGTGAAGACCTCCAATGAGGAGCTGGCACAGACCTGGAAGAAATCGGAGCAGTGGGCAACGATCGAGCAGCTCTGCAGTACAGTGGGTGGGCAGCCCACGGGTCTCCATGACTATGGGGCCATCGGAGGCCCCTCAGCGCCCGcctccacctcctccatgtGGTCCTGCCGCCACTGCACCTTCATGAACCAGCCCGGCACCGAGCTCTGCGAGATGTGCAGCCTGCCCCGCAGTTAG

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K14015 NPLOC4, NPL4; nuclear protein localization protein 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54035 lncRNA upstream 3828 26897509 ~ 26904963 (+) True AMCG00013286
TU53997 lncRNA upstream 123230 26784953 ~ 26785561 (+) True G43303
TU53895 lncRNA upstream 430247 26449384 ~ 26478544 (+) False AMCG00013265
TU53875 lncRNA upstream 512086 26367795 ~ 26396705 (+) False AMCG00013257
TU53853 lncRNA upstream 649809 26258710 ~ 26258982 (+) False AMCG00013255
TU54122 lncRNA downstream 90315 27010372 ~ 27010651 (+) True G43402
TU54159 lncRNA downstream 349971 27270028 ~ 27417787 (+) True G43438
TU54325 lncRNA downstream 1148589 28068646 ~ 28072799 (+) True AMCG00013317
TU54444 lncRNA downstream 1469632 28389689 ~ 28389960 (+) True G43673
TU54481 lncRNA downstream 1760753 28680810 ~ 28682174 (+) True AMCG00013336
AMCG00013286 mRNA upstream 7414 26900570 ~ 26901377 (+) False AMCG00013286
AMCG00013281 mRNA upstream 13428 26892596 ~ 26895363 (+) True AMCG00013281
AMCG00013290 mRNA upstream 37888 26862758 ~ 26870903 (+) True AMCG00013290
AMCG00013275 mRNA upstream 52155 26854424 ~ 26856636 (+) True AMCG00013275
AMCG00013273 mRNA upstream 169957 26737554 ~ 26738834 (+) True AMCG00013273
AMCG00013282 mRNA downstream 4509 26924566 ~ 26928580 (+) True AMCG00013282
AMCG00013284 mRNA downstream 9202 26929259 ~ 26963188 (+) True AMCG00013284
AMCG00013289 mRNA downstream 43631 26963688 ~ 26981369 (+) True AMCG00013289
AMCG00013291 mRNA downstream 61618 26981675 ~ 26998680 (+) True AMCG00013291
AMCG00013283 mRNA downstream 116558 27036615 ~ 27058921 (+) True AMCG00013283
TU54005 other upstream 97176 26808164 ~ 26811615 (+) True G43309
TU53939 other upstream 368742 26524826 ~ 26540049 (+) True G43263
TU53847 other upstream 650949 26254979 ~ 26257842 (+) False AMCG00013255
TU53706 other upstream 1387110 25520167 ~ 25521681 (+) False AMCG00013236
TU53419 other upstream 2138643 24768424 ~ 24770148 (+) True G42858
TU54155 other downstream 238245 27158302 ~ 27158721 (+) True G43434
TU54169 other downstream 465608 27385665 ~ 27415286 (+) True AMCG00013298
TU54201 other downstream 669082 27589139 ~ 27590818 (+) True G43476
TU54319 other downstream 1014017 27934074 ~ 27935938 (+) False AMCG00013310
TU54454 other downstream 1564216 28484273 ~ 28488783 (+) True G43682

Expression Profile