RNA id: AMCG00013286


Basic Information

Item Value
RNA id AMCG00013286
length 264
RNA type mRNA
GC content 0.57
exon number 3
gene id AMCG00013286
representative False

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 26897509 ~ 26904963 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAACCTGGAGCCCCCCAAGTCCGAGGTCAAGTCAGCCACCCGAGTGACTGGCGGACCAGCCACACCCCGCAAGGGACCCCCCAAGTTCAAGCAGAGGCAGACCCGCCAATTCAAAAGCAAGCCCCCAAAGAAAGGTGTTCAGGGATTCGGAGATGACATTCCTGGAATGGAAGGTTTGGGCACAGACATCACTGTCATCTGCCCTTGGGAGGCCTTCAGTCACCTGGAGCTCCATGAACTGGCACAGTATGGCATCATCTGA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0007601 visual perception biological_process
GO:0030553 cGMP binding molecular_function
GO:0004114 3',5'-cyclic-nucleotide phosphodiesterase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53997 lncRNA upstream 115009 26784953 ~ 26785561 (+) True G43303
TU53895 lncRNA upstream 422026 26449384 ~ 26478544 (+) False AMCG00013265
TU53875 lncRNA upstream 503865 26367795 ~ 26396705 (+) False AMCG00013257
TU53853 lncRNA upstream 641588 26258710 ~ 26258982 (+) False AMCG00013255
TU53839 lncRNA upstream 739431 26153236 ~ 26161139 (+) True AMCG00013251
TU54122 lncRNA downstream 108995 27010372 ~ 27010651 (+) True G43402
TU54159 lncRNA downstream 368651 27270028 ~ 27417787 (+) True G43438
TU54325 lncRNA downstream 1167269 28068646 ~ 28072799 (+) True AMCG00013317
TU54444 lncRNA downstream 1488312 28389689 ~ 28389960 (+) True G43673
TU54481 lncRNA downstream 1779433 28680810 ~ 28682174 (+) True AMCG00013336
AMCG00013281 mRNA upstream 5207 26892596 ~ 26895363 (+) True AMCG00013281
AMCG00013290 mRNA upstream 29667 26862758 ~ 26870903 (+) True AMCG00013290
AMCG00013275 mRNA upstream 43934 26854424 ~ 26856636 (+) True AMCG00013275
AMCG00013273 mRNA upstream 161736 26737554 ~ 26738834 (+) True AMCG00013273
AMCG00013274 mRNA upstream 174131 26725234 ~ 26726439 (+) True AMCG00013274
AMCG00013285 mRNA downstream 7414 26908791 ~ 26920057 (+) True AMCG00013285
AMCG00013282 mRNA downstream 23189 26924566 ~ 26928580 (+) True AMCG00013282
AMCG00013284 mRNA downstream 27882 26929259 ~ 26963188 (+) True AMCG00013284
AMCG00013289 mRNA downstream 62311 26963688 ~ 26981369 (+) True AMCG00013289
AMCG00013291 mRNA downstream 80298 26981675 ~ 26998680 (+) True AMCG00013291
TU54005 other upstream 88955 26808164 ~ 26811615 (+) True G43309
TU53939 other upstream 360521 26524826 ~ 26540049 (+) True G43263
TU53847 other upstream 642728 26254979 ~ 26257842 (+) False AMCG00013255
TU53706 other upstream 1378889 25520167 ~ 25521681 (+) False AMCG00013236
TU53419 other upstream 2130422 24768424 ~ 24770148 (+) True G42858
TU54155 other downstream 256925 27158302 ~ 27158721 (+) True G43434
TU54169 other downstream 484288 27385665 ~ 27415286 (+) True AMCG00013298
TU54201 other downstream 687762 27589139 ~ 27590818 (+) True G43476
TU54319 other downstream 1032697 27934074 ~ 27935938 (+) False AMCG00013310
TU54454 other downstream 1582896 28484273 ~ 28488783 (+) True G43682