RNA id: TU54035


Basic Information

Item Value
RNA id TU54035
length 4218
lncRNA type sense_over
GC content 0.42
exon number 4
gene id AMCG00013286
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 26897509 ~ 26904963 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cccacccctccaacTGTTCCCTATTGTTGTTATCAGTAGTGATGACAGTGGATCAGCACTGACGGCTTCTTGCCCTAATCCCCTCTGTGGCAGCGGGTATAAGAGGCACCCAGGCTGGGCTCCACACTCAGAGCAACCCTGGCTTAGAGAGACAAGCCTCGGCCAGAGAGAGCCGTGGTACGCTCTCGCCTTTGTCTGGCAAATGGTCACCGCCACATAACCGTTCCAGCAACTTAAAAACACCAGCAACTCTCCATAACATCCAAGGAACGTGACTCGGCACCACCGTAACAAAACCCACGCCGGCAAGCGCACGGCATCCTCAACGCACCCTCTCATCATCCGCAAAGCCACCGTCGGCCCCCACAATGAACCTGGAGCCCCCCAAGTCCGAGGTCAAGTCAGCCACCCGAGTGACTGGCGGACCAGCCACACCCCGCAAGGGACCCCCCAAGTTCAAGCAGAGGCAGACCCGCCAATTCAAAAGCAAGCCCCCAAAGAAAGGTGTTCAGGGATTCGGAGATGACATTCCTGGAATGGAAGGTTTGGGCACAGACATCACTGTCATCTGCCCTTGGGAGGCCTTCAGTCACCTGGAGCTCCATGAACTGGCACAGTATGGCATCATCTGAGACCTCCAGCTGGCCCACAATCCTCTGTACATTTCACTCCTCACCTCTTCCCTGTTCAACACCCCACCTAGTCCTTTCTGGACAGAAACATATATTctacaaaactataaaaaaaagagcaaaaaaattgaaaacagaacatttcttacaaaaaaatatatatttctattctAAGAACTCTCTTTCCTATAttgtttctgcctttttttttctgccagaATTAATCTTTATTTCTGCTCAAGTCTAGTATTCTCTTAGCATCTCTGTACATAAATGGCATCTGTCACCTGCAGTCTACTTCTGCCTACTTCTCTTGTTTTTGTACAGCCTAGCAGCCAACATCCATATCTTAGTCTATCCTCTCTGCCCTAaactttctcttctcttctcttcaccCTTCTTATCTCTTCTCTTCTCGTCTCTTCTTCACCCTTTTTATCTtatctcttctcttctcttcaccCTTCTTATCTCTTGGAACAAAACGTGAAACTTACGCAAGCGACGCAGCCTCATGTGAGAATACAAGCAGACAAACCCATGAAACATCTTGCATTTGTTTCATGAGCTGAGTGTTTTCACCAACATCTTGAAAACCCACCCaagctagaaaaaaaaaatatctgggACCTGTAGAGGTGGGACTAAGATCTGGGACATTTGCTGACCATCGCAGAGCATAACTTTCACTTCAGTCACTGCAGACACCCCCGTGCTGGGTTCCATTTCTTCACCCGGAAAACTCAAACTGAAcccttctctttctcctcctccttgtATCTTCTATTAattttttctgtttcaatttCTTACTTCTGTCTTTtgtatcaatgtattattatttttattatctcttcgtttattgatttttattataaaatacagaaaaaaacatacactcaGGGAtaaatgctttctttctctATGTGCGGCAGTCACAGCAGCATTTACCAAGCTTCTATAGTCTTTCTTGTGAtcttttatttctattaaataaattgtgcCCTAAGTGACATGGGGCACCTCCATGTTTACATCCTTGTTTGTGAAAATGCAATGTGTTCCCAGACACACAGAGGCGGACAGACATGCTTCAACCAGGTGCTTGTAAACACTCCAGCCTGGTACTGTAACACAACCTGATGAAACCTGTCTTTATCAAGGTCACTCAGTGGCTGAGTAGCTTTTGCCTGTTAAGCATCGTGtcttgtttcacattttctgaTGCTGATAAAGCTGAGTTCAtctttgttgcatttgttttgtgtttctttttcttgagCTCACctgtttacatttcttttccatGCTATTATATTAGAAGCACAGTCCTTGTCAACCCGGTGTTCATAattttctctctgtttcagtgttttcaacCCTTTCTTTTTGACATACTTTTCTGTTCCATTGTGAATTCATCTGTAGCCCCATCGTCATGACTTGTTTTCCTGTTGTCTGCATGTTTACACAAGCTATTGAGTAGCTCTGTAGCTTATTGTCATTGCATGCTCATtttaagtgttgttttttttctcatgtggCAGGCTTCCTTTTTATTGCACGGTTATCTTGCATGTTACTATGTGTTCAAGCTTGCATTTTCATTCATCTCATTTCACTGTCATGTGCATGTTATCATTGTGTTGCATgcctttgttttcttgcatgCTTATTTGCATCTCATTCCTTTTACCATTGCATGGTCATTCTTTCCTGTACATTTCATTtggcattgtgttgtattgtattgtagggTGTCTCTTTCattatctttctctttttccatGTTAGATTCTtcatttttctgtgcttttttattttattatgacatattgtttcattaaatacatctgtctTTACTTTGCACCATCCctttacataattatattttgcccTTTTCCAATTCAAGAAAAGCTAAATATTCCTGCATCACCCATATATCACCTTCTGTTGAGCTTAAGCTGAATTTGTGATATACAGCTTGAATTATAAggagatataaaaaaataatgatgcaAAGTGATGGCACCTTTTTGCACTACTTGCTTCCCTGCTTGCTTCTTTTCTTCATATGAGTTTGTACTGaaatactgaatgtatttttggGCACATTTTCTCTCCAACCTTTCAATCTTTAtctgtccttttttcttttattttctcctattcTCATGTGTGGGTTCAGGCCACTGAATACCAAAATGAGATTAGTTTGGTTTGGCAtccagtgtgttttgtgtgctgcCGCTGACAATAGAGGCACACCTTTAAatcagtgcattgtgggtaaacGTCAGAATGATCTGGCAATGCAGACCTTGATTCAGCAAAGGCAGTGGTCCCATGTCATCAGAAACCAAAGTGAACGAATGTCCTCTCTACAGGACCCAGTGAAAATAAAGCTTgaaaaaaagagggaaaaattAAACTTgcttcattttctgtgtgtttatttcagtgttcTTTAGAAAGTAATTTTAGTatacataaaacacattgtgattatattctttacaaaatacaacttgCCAAAGATAATTGAATTACTCTTTTACATGAATGTGTACTACACAGAAGAAACTGATATAGTCTAGTCCTCAACCTTTCGTTTTATCTGCAGTGCCTGAAAACTGATGACCCTTACTGATCCTTACTTCCCTGTTTTAATCTTATCAAACCCACAACATATCCCAATGAAGAGCTATTTCTTATTACTTGTTCAAAAGAGTTTGCTATTTATAacctattaaacatttaatgataTTTCTGCAATGTGTTTCTAGGATACTATCTAGCACTGCACCACAACAGCTAGGTTTAGCTAGTTAAACTGGTATTCTTCATGTGTGGAATAGTCAAGACTCTCCCTCTACTGGCTGGAGTacgtatttaaaacaatactaagCTTTCCATGATGGGTGCCAGTTGGTTTCACAGACGAGGACTGACACCAGTCCTGGACTACCCTACCTAAACTTACATTGAGTCCAAGACAAGTACTAATCTGGCTCCATGAAATCAGCTCTGATTGTGTCTGTGAGGAAGAAAGCCCTCAGATTAAGTTTGATTCtttggtgttattttaaatgctgggCTGTATAATCAGGTTTCTGAGTCCCAACACCTTCTGATTCTATATTGCAAGATgagttttcaataaaatatcttTCCATGACATATTATTTGTGTTCACAAACcttgaagtgttttaataaatagAACATTGCCTTTCTTAGTACTGTGTAAGTGACTGCTAGAGAGCAATCACATGTCACCCTGCCAGTATGCTTTGCTCTGCTGAATGTTGTCCACCATGTGGGTGGTAATGAACAGGCTCACGACTTGAACACCCAGGAGCACAATGCCCACTGCACCCACAGTGCCCGTATGTTGCCCAATCCAGCGTGAGATGCCACCCAAGCACCCGCCCAGGTAGACTTCGCTCTGGGCCGAGAACTCGTCCAGCCGCTGGGCCCCCAGTCCGCACTGCGAGTTCCACACCGTGCCGTTTTCCAGGGGGTTGACACAGCAGGAGGGGGGCACGCCACACGCCTGGATACCGGGAGCGGTGCAGTTAAAGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53997 lncRNA upstream 111948 26784953 ~ 26785561 (+) True G43303
TU53895 lncRNA upstream 418965 26449384 ~ 26478544 (+) False AMCG00013265
TU53875 lncRNA upstream 500804 26367795 ~ 26396705 (+) False AMCG00013257
TU53853 lncRNA upstream 638527 26258710 ~ 26258982 (+) False AMCG00013255
TU53839 lncRNA upstream 736370 26153236 ~ 26161139 (+) True AMCG00013251
TU54122 lncRNA downstream 105409 27010372 ~ 27010651 (+) True G43402
TU54159 lncRNA downstream 365065 27270028 ~ 27417787 (+) True G43438
TU54325 lncRNA downstream 1163683 28068646 ~ 28072799 (+) True AMCG00013317
TU54444 lncRNA downstream 1484726 28389689 ~ 28389960 (+) True G43673
TU54481 lncRNA downstream 1775847 28680810 ~ 28682174 (+) True AMCG00013336
AMCG00013281 mRNA upstream 2146 26892596 ~ 26895363 (+) True AMCG00013281
AMCG00013290 mRNA upstream 26606 26862758 ~ 26870903 (+) True AMCG00013290
AMCG00013275 mRNA upstream 40873 26854424 ~ 26856636 (+) True AMCG00013275
AMCG00013273 mRNA upstream 158675 26737554 ~ 26738834 (+) True AMCG00013273
AMCG00013274 mRNA upstream 171070 26725234 ~ 26726439 (+) True AMCG00013274
AMCG00013285 mRNA downstream 3828 26908791 ~ 26920057 (+) True AMCG00013285
AMCG00013282 mRNA downstream 19603 26924566 ~ 26928580 (+) True AMCG00013282
AMCG00013284 mRNA downstream 24296 26929259 ~ 26963188 (+) True AMCG00013284
AMCG00013289 mRNA downstream 58725 26963688 ~ 26981369 (+) True AMCG00013289
AMCG00013291 mRNA downstream 76712 26981675 ~ 26998680 (+) True AMCG00013291
TU54005 other upstream 85894 26808164 ~ 26811615 (+) True G43309
TU53939 other upstream 357460 26524826 ~ 26540049 (+) True G43263
TU53847 other upstream 639667 26254979 ~ 26257842 (+) False AMCG00013255
TU53706 other upstream 1375828 25520167 ~ 25521681 (+) False AMCG00013236
TU53419 other upstream 2127361 24768424 ~ 24770148 (+) True G42858
TU54155 other downstream 253339 27158302 ~ 27158721 (+) True G43434
TU54169 other downstream 480702 27385665 ~ 27415286 (+) True AMCG00013298
TU54201 other downstream 684176 27589139 ~ 27590818 (+) True G43476
TU54319 other downstream 1029111 27934074 ~ 27935938 (+) False AMCG00013310
TU54454 other downstream 1579310 28484273 ~ 28488783 (+) True G43682

Expression Profile