RNA id: AMCG00013287


Basic Information

Item Value
RNA id AMCG00013287
length 1467
RNA type mRNA
GC content 0.57
exon number 7
gene id AMCG00013287
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 27111850 ~ 27117437 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAACTGATTGGGTCCACCCAGACTGCTACTTACGCCCGTCCCAGAACAGGCCATTTTCTCCCCGCTATATCCACCATGGCCTCCAGTTATAAAAACCATTACCCTCACTTTGCCCTTGTCCAGAGTGCCAACCAGCCCTGGAGATCCAACACTTTCTACCGAACAGTCAGCACCGTTCCCACTCTGGCCTCTATCTCACGGACTTCCCCGGACCTCATTAAAGCCAAAATGAACTTCTACCCCTCGAACCGCACAGCGCTCGTCACTCGCTACACCCCGGAGGACTGGTACAAGTCCAACCAGAGCAACTACAGGGAATCGGAGTCCTCCCGGCACAGTGCGGAGAGGCTGCGCAGGGACACGGCCCGCCTGATCCAGGACAAAGAGCAGCTGACCAGGAGGAGCCAGGAGACCACCAACAAGAACATCGGGGAACGCATTAACGACATCGCCTTCTGGAGATCCGAGCTCAACCACGAGATTGAGAACATGGTCGGAGAGATCAGTATGCTGACTGACGTGAAGAAAAGGCTGGAGAGGGCGCTGGCAGAGACGGAAGGCCCCCTACAGGTGGCCCAGGAGTGCCTGTACCACCGGGAGAAGAGAATGTCTATTGATCTGGTCCATGATGAAGTGGAAAAAGATTTACTTAAGGAGGTTGAGGTCATCAAGTCCTGCCAGGAAAGAATGAGGCGTCACCTGGACAGGGCCAACGCCCAGCTTGCGTCCAACAGAGCAGCCCAGCACGAGCTGGAAAGAGACATCAATGACAAGGTGACGGCCCACCGGATTGATGACAGATGTCACCAACTCAGAAATACCTCCGATGGCATCAGTTTCTACAGAGGGGTGGAGAGAATCGACCCCTCACTCTCGATCCCCGATTCCTGGGCCAAGTTTACGGATGACAACATCCTCCGGTCCCAGAGTGAGCGTGCGGCGTCTGCCAAGCTGCGGGATGAAATAGAGATCCTCCTCAGCAGCACCTCAAACGAGATGTGGAACCAGTTCAACTCTGTGAACGTGGCTTTTACCAACCGCATGTCAGAGACCGCCGATGCCAAGAACAACCTGCAAGCGCACTTGGCTAAGACCCTGCAGGAGATCTTTCAGACAGAGATGCTCATCGAGGCCTTAAAGAAGTCCATCAGGGATAAAGAGAGTCCCCTGAAGGTGGCCCAGACCCGACTGGAGGAGCGAACCAGGAGGCCCAATGTGGAGCTGTGCCGTGACAACCCGCACCACCGGCTGGTGACTGAGGTCCGGGAGATCGAGGACACCGTGCAGAAGCTGAAGGAGCGGCTGCGCGACGCCGAGCACACGCTGCAGACTCTGGTCCACACCAAGGTGTCCCTGGAGCACGACCTGTCGGTGAAGGCCAACTCGCTGTTCATCGACCAGGAGAAGTGCATGGGCATGCGCAAAAGTTTCCCCAGCACGCCCCGCCTGGTGGGGTACACATAA

Function

GO:

id name namespace
GO:0000226 microtubule cytoskeleton organization biological_process
GO:0005874 microtubule cellular_component

KEGG:

id description
K18630 TEKT3; tektin-3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54122 lncRNA upstream 101199 27010372 ~ 27010651 (+) True G43402
TU54027 lncRNA upstream 181597 26872821 ~ 26930253 (+) True G43326
TU54034 lncRNA upstream 188711 26892614 ~ 26923139 (+) False AMCG00013281
TU54035 lncRNA upstream 206887 26897509 ~ 26904963 (+) True AMCG00013286
TU53997 lncRNA upstream 326289 26784953 ~ 26785561 (+) True G43303
TU54159 lncRNA downstream 152591 27270028 ~ 27417787 (+) True G43438
TU54325 lncRNA downstream 951209 28068646 ~ 28072799 (+) True AMCG00013317
TU54444 lncRNA downstream 1272252 28389689 ~ 28389960 (+) True G43673
TU54481 lncRNA downstream 1563373 28680810 ~ 28682174 (+) True AMCG00013336
TU54482 lncRNA downstream 1563373 28680810 ~ 28682174 (+) False AMCG00013336
AMCG00013283 mRNA upstream 52929 27036615 ~ 27058921 (+) True AMCG00013283
AMCG00013291 mRNA upstream 113170 26981675 ~ 26998680 (+) True AMCG00013291
AMCG00013289 mRNA upstream 130481 26963688 ~ 26981369 (+) True AMCG00013289
AMCG00013284 mRNA upstream 148662 26929259 ~ 26963188 (+) True AMCG00013284
AMCG00013282 mRNA upstream 183270 26924566 ~ 26928580 (+) True AMCG00013282
AMCG00013288 mRNA downstream 12727 27130164 ~ 27140599 (+) True AMCG00013288
AMCG00013298 mRNA downstream 268654 27386091 ~ 27386627 (+) False AMCG00013298
AMCG00013296 mRNA downstream 431368 27548805 ~ 27569295 (+) True AMCG00013296
AMCG00013299 mRNA downstream 475338 27592775 ~ 27609468 (+) True AMCG00013299
AMCG00013307 mRNA downstream 694256 27811693 ~ 27814163 (+) True AMCG00013307
TU54005 other upstream 300235 26808164 ~ 26811615 (+) True G43309
TU53939 other upstream 571801 26524826 ~ 26540049 (+) True G43263
TU53847 other upstream 854008 26254979 ~ 26257842 (+) False AMCG00013255
TU53706 other upstream 1590169 25520167 ~ 25521681 (+) False AMCG00013236
TU53419 other upstream 2341702 24768424 ~ 24770148 (+) True G42858
TU54155 other downstream 40865 27158302 ~ 27158721 (+) True G43434
TU54169 other downstream 268228 27385665 ~ 27415286 (+) True AMCG00013298
TU54201 other downstream 471702 27589139 ~ 27590818 (+) True G43476
TU54319 other downstream 816637 27934074 ~ 27935938 (+) False AMCG00013310
TU54454 other downstream 1366836 28484273 ~ 28488783 (+) True G43682

Expression Profile