RNA id: AMCG00013289


Basic Information

Item Value
RNA id AMCG00013289
length 6517
RNA type mRNA
GC content 0.49
exon number 26
gene id AMCG00013289
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 26963688 ~ 26981369 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCAGTTGCAACAGTTTCTGTCTGTGATCGATGGGATACAAATTGGGATGTGCATTAACTTTTCCAGTTGTTTTGGATGAAGCTTCAAAGGAGGCggttatttatttgtcatttggGCTCATTGGGATTATATAATAGGCCTAAAACGTGTATCGATCAGTCTAATGGAGAGAAAGACGGGCGATGTAATATATATAGTGCTGTATCCATCAGTGATACAAAATTGAGCTTTAATTGCTAAATTACTGTCTGATTGTAAAGAAATGATCTGTATCGGGCTGTTTACGAATATAtgcatcatttttattatttgcttcAGTTTTAGATTGAAAAGGAGAGaagattattgatttatttattttgtatttgattcaGTCTTCGAAGTGTGTAATTGTGGGGCTTGTTTTGCaaagaacaacattttttgCAAGTCAAATGATAATACCAGtaagatgtattattatgttttatcaaTAATGACTTAGTGTATCTTGTGACAACCTTTTGATTGGTTTTAACGTTGTGTGCATTGGCACTACTTACTACGTGTTTAATACAGTGCACAGTTTAATGAATGGGGATACATTAATCAgagtatacattttatacatcatAAAAATCAGTTCATTAATCAACCAAACTAACACGTTACTGGTTTCCTGCTTGCGAAAACATCGTCTCACGACTGGACTGGAAATACTCAAGGTCCGTTGAGGATGCACTCTGCCCGCAGCCCGCCCTCTCTGCCTGGCAGCGTCTCGGTGGGCGCGGGGGACGCCCTTGATCTCAGCCTCACGGGCTCCCAGCTGTCTGTGTCCCGCAGACCAAGCAGCGCATCTCCGGCCAAACAGTTCTCccgctctgtctctgtctccctcgCTAGCGACAGCAAGGGCAAGCGCAACACCCTGGCAGAACCCGGCCTGGGCAGCTCTCGCTCCATCAAGAATTTGCGGAGGTCAAACAGCACCACACAGGTCAACCAGAGACCCAAACCCTGCGTCAGTGAGGAGCCACCAGACGACTTCCTGGCCTTATTCGACAGCAGCTCTGATGGCCGCAGGAAGCTGGCCAGCCTGAGCAAGACCTCCCCTGACCGCACCACCTGGAACATCCTGGATGACCAGCCCAGAGTTTTCCCCACGCCTGGCAGTGCCCGCAGAACCAGCACCACCGACTCGCCAGCAGGTCTGAAGAGGAGAGAGGCTGCAGTGGCCCTCGCTGCCAACTTCACCGCCAATAACAGgAGTAACAAAGCAGCCGTGGGGAACTCTGTGACCACCATCCTGCACAACAACTACTCCGACAAGCCCCTCACCCCCAAGAGCTCCAACCAGAAGCCATCTTTCAATAACATCATCAAGGCTACAGTCAATGACGAGGGCCCTCTGGAGAGTGCCTCACTGACCAAGTCTCAGAAGAACTTCTCCTCCCCCAATAACAACGCGGCGCGCAGCAGCCCCTCCCAGCTGAGGAGACGGGAAGTAACAGAGGAGGAGGCGGAAAGGTTTATCCAGCAGGTCAACCACGCAGCCGTCACCATCCAGCGCTGGTACAGACGCCATGCGCAGAGACAGCGTGCCAACGAGGCGGCCCTCAAACGCCTGCTGACCACCAAGAAGCAGGAGAGGGAGCAGAGAGCGGAGGGAGGGAAGGCGCAGGAAGTGCTAAAGAAGAAAGAGGATGACCGGAAACGCATTCGGGAGGAGAAGGCACGACTGGCCAGGCGAGCTGCTATACAGGAGCTGCAGCAGAAGAGGGCCCAGCGAGCCTCCGAGGCCCAGCGAATCGCGGAGGAGGAGATCGAGGCCCTGAGGCAGTGTGGGAAGGTGGGCCGAAAAAAACCTGCAAAGCTGTCTCCTAGCAACAAGGGTACTGGTGCAGCCGGCGACATCAAGGCCAAGAACATGGACTCCAATGTGAATGTTTCCGCTGATGTTGATGATGCTTCGAACCTGAGATCAGGGTCCCCCACTGACTCCCCGGGCAGAGGGTCCCAGTGCTCACAGGAGCTGGTGCACAGCGCAGTGAGCCACGAGGAGCAGCGGCAGACGGCACCATCCAGCAGAGCCCAGTCGAAAACCACTCTGAACGACCTGCTGGATACCCTCAAACTGCTGGAGGAGGAGCCCGAGAAACTGCCTGAGCCCAAGAGCTACAGGAAGGAGAAGTACTCCTGGATTGATGAAGACGCAGATTCCAACTCGCTGACGGCCGACAACCTGGAGCGCCACGGCAAGCTGAGCCAGTCACCTGCCCTGCCAGACGGGGGCGCCCTGCTCTCGGAGGCCAAGCTGCAGAGTATCATGAGCTTCCTGGACGAGATGGAGAAGTCCGAGCAGGAGCGGCCGCGGTCAGTCACCTCAGGGTCGCTCCGAGAGgtgctgctgtctgaggaGGAGCTGGCGGGGGTGGAGCAGGCCTCGGCGACGGCGGCGGAGGTCACGGGCTCCATGATGAGGGTGAAGCTTGAACTGGAGGAGAAGAGGCGGACTGTGAACATGCTGCAGACCGCGCTGGCCCAGCAGCGTGAGTTGACCGTCCGACACGTCAAGGAGACAGAGAAGGAACTCAACCGCAACTTCCAGCTGCAGAAAGAGCAGTACGAAGCCACCATCCAGAGACACCTGGCCTTCATAGACCAGCTCATTGACGATAAGAAAGCCCTGAGCGAGCGCTGTGAGGGCGTGGTCACCGAGCTCAAGCAGGTGGACCAGAAATACACCAAGAAGATCGCCCAGATGCAGGAGCAGCATGACTTGGAGATCAAGAAGCTGAAGGAGCTGATGAGCGCCACCGAGAAGATCCGCAGGGAGAAGTGGATCGATGAGAAGACCAAGAAGATTAAAGAGATCACTGTGAAAGGGCTGGAGCCGGAGATCCAGAAGCTCATCGCCAAGCACAAGCAGGAGCTGAAGAAGCTCCGAGCCGTCCACGAGGCCGAGCTGCTGCAGGCGGACGAGAGGGCGGCCCAGCGGTATGTGCGACAGACGGAGGAGCTCCGCCAGCaactggagagggagaaggaggagcagTGCCAGCGGGAGAGGGAGCTCGCCAAGCAGAGGTATGAGAAGcagctggaggaagaggagacagCTCTGCAGCAGCAACGCCGGCGGCTCTACGGCGAGGTGGCCGAGGAAAAGGAGAGACTAGCTCAGCTGGCGGCCAGACAGCGTGCTGAACTGGATGAACTTAGGAGGcagctggaggacaacagctcTCTGGCGGGGCGGGCGCTGCGCGAGGAGTTCGACCGGACCCGCgaggagcaggagaggagaCACCAGgCGGAGATAAAAGCCCTGAAGGAGAGGCTGGAGATTGAGAAGCAGGCCTGGGAGGAGAACTACATGAAGAAGGAGGAGGCGTGGCTGTTGAGCCGCGAGCGCGAGCTGAAGGACGAGGTGCGCAGGGGGCGGGACAAGGAGATTGAGTTGGCCATTCAGAGGCTCGAGGAGGAGACGAGCGGCGCCAGGGACGAGTGCGAGAGGGCCGCCGAGAACCGGGTGAAGCGCGTGCGGGAGAAGTACGAGACggagctgcaggagctggagagaTCCGAGAGGAACCTGCAGGACAAGCACAACGAGCTGAAAAAGCGTCTGAGCGAGACGGAGGGGGAGGTCATCCGCCTGCAGGGTCTCCTACGGCAGAAAGAGCAGGAGGTCCAGGACATCACACAGATCAGAGACCGGCTGGCGGACGAGCGGCGCAGCCTGGCCGACGTGGTCCGGCAGGAGTTTGCCGACCGCTTGGTGGCCACGGAGGAGGAGAACCGGAGAATGAAAACGGAGGTTTCCGAGACCAGGGCCCGTCACCGACTGGAGGTGGAGAGGGTGACCCgtgagaaggaggaggaactGGCGGAGGTCCATGAGAGggTGAAGGCAGCCATTTTGAAGAAGGAAGAGACAGTCAATAACTTGCGGAAGCAGCATGAAGCGGCACTGAAAAGAGCTGATCACTTGGAGTCCTTGTTGGAGCAGCAGCGAAAACAGCTTCTGGGGAAGTGAACGAACAGGAACACACCGGCATTGTGCCCagatattttcagttttttcttccttggacCAACAGAGAAACTGCAGGGGCCTGTCTGCACACTCCGGGTTCTCTGAGTCCTTAAATCTCACGGTGGAACGCTAGTTGTGCTAATTTTAATGTTCAGGAAGTCATGATTGATAAAAGTATCCTGTGGAAACTGTCTGGAAATGGCACTACAACTTTATTTTCCCACATTCCCTGTAGGAACCGGCCTCCAAAGTTGCACATTTCACCCGAGCACCACCCTGATGGAAGCCAGTGCCCCAGTCAACGAATGCTTTGAAATGCTGAGGGCCAAAGTATTTCAATCCCTCAGTAAAAGCAGAACATCCAGCATATGATAAATTCAGACTTTTCTGTGGATCACTTTGGAAGAACATTCTGCtaattttaaaaccatataATGATCATCCAGcactataatatatttttctgtcctATAAAAAATGTTCTAAAAAGACCTTCCAGATGTTCACAGCTGCTTGGTGTTGTCACAGGGTTTCCACAGCTTGTGCTCGAGTCGCTTTGTGGACACTGCAGTGGTATGCTTGGCCTGTGTTTCTGTGATGTGAGCGCTTGTCTACAAACTAGAAGACACCAATTTACTTGTTTGGCCGACACATTTCATTCACACATTCACCCACAGATCTTACTAAGGAACCCGACCTGCTTCTCCCAatgttactgtactgttttgtaTGTAAAGGGTGTGTTCAAAGCTTGAGTAAAGTTTAAAAGTGCTAGAGAACTTCTGAGTATTTGGCAGAGTAGTTTTGGAAGTATGGAGAGGAATTGAATGCAGGGAAGAAATGAGGAATGGAAAATTGCATGAAGTGATACAGATCAGTAGGAGCTGAGTACGGGACTAAATAAAGGAAGGCGAGAGAAAGGGAAAGGAGAGGAAGTAAAGAGAAAGGAGGGACTGAAAGAAGGAGTGGAATTGGGGGAGTGTGGGAAGGTTGTTAGAAGGTACTGGAGGAGTTTCTTATGGCATTGAGCATGTTGACAGCCATTAGTATAGTTTCTGACTTAGTCTTTACAAAGTGGCTAACAGGCACACTGTAACCATGTGATTGTCTTAGTGTTTCAAGTCTTAGTGGTCTTTTGGCTTTAACAATCTTCACTGACAATCGGGTCATATTGTTGAAGTCCACAGCTGTAGGTAAGACTTTTTGGTCCAACAGTTGGAAGTAGTTAGCCTTTAAAGTCAGCTGTTCAAAGCCTGAACgcccttacacacacacacacctataaaagaaaatattttaactaGAACACAGAACAATCTGGGCATGACGGATAAAGCTGGTTTCGGTTGTTCATGCCAGATGTCTTCAGAAGATAAAAATGTGGTAAGCATCCAAGCAGTGGATGAGGTATTTTCACTTTTTGAGGATctatcttgttttgttttgttttgtaatggatGTAATCTTTGTTCTGGTAATGAACTCAGAATGCCGTCTTGAATATTCAAGGCTGTGGGATAATAtgaaaaatgtctttattaatcCTGCTGccttctgcatttttttccGTGCTTGTgaaatgcttgtgtttttgcTCAACCCACCATTGTCTTGCAGCCaggcttttctttctcttttcctgtTGAAATTGTCATCATTGAAGTCAGAAAACATTGACTCAAACTGCAGGTCTcctaatttcatatttaatatgagCATAACATTTCactgttatttttctgtatgaaccacttttgtttttgtactgtatgtgtCTCAATGTGCTGGTGAATGTAgatccttttaaaatgataaacattttctaaaaatacttCTTCACTGAAAGCAATATGTGAGTGTTACTTTTTCGGAAAGTCCCTCACAATGAGTTGTGCTCCCCCTCACGAAAGTTCACACTTTCGTTCCCCGTTACAGATTCATAGCTGCCTCTGCGccagaaaaacatgtttgtttctctctgtcttcacactctgaggaagaaaaaagaccaaacaaacttattttaataatagaaCTTAAAAGCTTATTTTCCAGACTTATTGCCCAATTCTCTCTATCAGACCTCTCTGTGAAATAATTTCCATTTCTCCATCATTCTTTAACTATTTTGGGACCTTTTAGACTGAATCACTACAGCTACTAGGAAGAAAAAATACTGACTGAAAAGTGACTAATAAGAGTGACCACAGTTGAAGACTGTTTGctacttatttattgtatttgtgaaGTAGTCTATGTAAACATAACAATTTTTTGCACTctcaacattaaaaacaacaacaaaactgcatgtgaaaaatgcttttttaaattgtaattttagtaAATAGGACAGACAGATCTGCACTGAAGTTGAGGCTGCGTGAACATCCTATACTGTTAATTTTCACTTCCTTTGTTTTACTCtctgattttaaaacacattgttaAAGAACAAAAGCAAACCAGCAAAACAGGACATGCCTTTTGTGAATTGC

Function

GO: NA

KEGG:

id description
K16540 AZI1, CEP131; 5-azacytidine-induced protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54027 lncRNA upstream 33435 26872821 ~ 26930253 (+) True G43326
TU54034 lncRNA upstream 40549 26892614 ~ 26923139 (+) False AMCG00013281
TU54035 lncRNA upstream 58725 26897509 ~ 26904963 (+) True AMCG00013286
TU53997 lncRNA upstream 178127 26784953 ~ 26785561 (+) True G43303
TU53895 lncRNA upstream 485144 26449384 ~ 26478544 (+) False AMCG00013265
TU54122 lncRNA downstream 29003 27010372 ~ 27010651 (+) True G43402
TU54159 lncRNA downstream 288659 27270028 ~ 27417787 (+) True G43438
TU54325 lncRNA downstream 1087277 28068646 ~ 28072799 (+) True AMCG00013317
TU54444 lncRNA downstream 1408320 28389689 ~ 28389960 (+) True G43673
TU54481 lncRNA downstream 1699441 28680810 ~ 28682174 (+) True AMCG00013336
AMCG00013284 mRNA upstream 500 26929259 ~ 26963188 (+) True AMCG00013284
AMCG00013282 mRNA upstream 35108 26924566 ~ 26928580 (+) True AMCG00013282
AMCG00013285 mRNA upstream 43631 26908791 ~ 26920057 (+) True AMCG00013285
AMCG00013286 mRNA upstream 62311 26900570 ~ 26901377 (+) False AMCG00013286
AMCG00013281 mRNA upstream 68325 26892596 ~ 26895363 (+) True AMCG00013281
AMCG00013291 mRNA downstream 306 26981675 ~ 26998680 (+) True AMCG00013291
AMCG00013283 mRNA downstream 55246 27036615 ~ 27058921 (+) True AMCG00013283
AMCG00013287 mRNA downstream 130481 27111850 ~ 27117437 (+) True AMCG00013287
AMCG00013288 mRNA downstream 148795 27130164 ~ 27140599 (+) True AMCG00013288
AMCG00013298 mRNA downstream 404722 27386091 ~ 27386627 (+) False AMCG00013298
TU54005 other upstream 152073 26808164 ~ 26811615 (+) True G43309
TU53939 other upstream 423639 26524826 ~ 26540049 (+) True G43263
TU53847 other upstream 705846 26254979 ~ 26257842 (+) False AMCG00013255
TU53706 other upstream 1442007 25520167 ~ 25521681 (+) False AMCG00013236
TU53419 other upstream 2193540 24768424 ~ 24770148 (+) True G42858
TU54155 other downstream 176933 27158302 ~ 27158721 (+) True G43434
TU54169 other downstream 404296 27385665 ~ 27415286 (+) True AMCG00013298
TU54201 other downstream 607770 27589139 ~ 27590818 (+) True G43476
TU54319 other downstream 952705 27934074 ~ 27935938 (+) False AMCG00013310
TU54454 other downstream 1502904 28484273 ~ 28488783 (+) True G43682

Expression Profile