RNA id: AMCG00013292


Basic Information

Item Value
RNA id AMCG00013292
length 2277
RNA type mRNA
GC content 0.53
exon number 17
gene id AMCG00013292
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 27145647 ~ 27159340 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCGTAATTGTCTCAACGCGAAGGAGGAGGGAGTATCTTTCTGTTCTGGCTTGAGAGAGAAAGACTTGGGGAAACTACACAAAGCTGCCGTTAGGGGAGATGTTTCCAAGTTAGAAAAACTTTCCAAGAAGCATGATTTAAATCAGGTGGATAAAGAACACAgAACACCCTTGCATCTTGCCAGTGTCTGTGGAAAGGCAAACGTTGTGAACTTCTTGGCAGAAAAGAAGGCAGCGTTAAACCCCTTggataatgaaaacaaaacccctCTTATGAAGGCTGTGCAATGTGAGCAGGAGAGCTGTGTTGTCGCCCTGCTGGAGCACAAAGCCGACCCGAACCTGGCGGACATTGATGGGAACACGGCCCTCCATTTCACTGCCGTCATCCGGTCCGTTTCTCTGGCTAAGCACCTACTGGAACATGGGGCCAACATCAATGCTAAAAATAAGGATGGCTTCACCCCTGCGATGCTGGCTCTTGCAGAAGAACATTTTTTTGTGGCATCATTTCTGCTGGAACAAGGAGCAGACACTGATGAAGAGCATCGAATGAAGACCGGGTCAAAGAAATCTGTCTTCTACCAGATGAGGAAGAGCTGGATTGTAGGCCAAAGAGCAGGATGGAGCGACGATGGACCCAAGAAAAATGTGTCTCCTCCCATGGCCTCCACACCTATCCAAGACTTCAAGAAGaggaagaggaagacgGAGATCCTGAAGCTCTGTCCGCTCCTGGATGTGTTCAAGCAGAATCTGGCACTTCCAGGCCTACAGCATTCCAGAAAAAAGCCGGAGTGCTTCGCACAACATTTGGAGCTTGAACAAGTCAAAGAGATTGAGCAAGTGGACGAAGATGACTCTTCCTGGGACTCTGAGtcTGATTGTGACAGTCCTTCCCCAGTGGAGACCCCAGCACCGGTGCTCAGAGTTTCTGAGAGGGCAGTTGAAGaccTATTGGAAGAACTTGGCTGGAGCGACGCAGATAATTTTGAAgATGAGTCGCCGGTCCCCAAACAACGCCTGGTTTCGGAGGATGAAGCCAGTGACCATGGCGTTGGAGCTGCAGAAGCACTGATTGAGGCTGCGTCTCTGCTGTCCCAGCAGGTCGACAAAGCTGAAGCCAAGGCCAACAGCCTGGAAAATGATACATCCCTTCTCCTGGAGACCACGCGGCGGGAGAGAGATGAGGCCCTCGAACGCCTGAGAGACCTGGAGGCCCAGCTGCAGGCGGAAAAGGAGCAGCGGAGTCAGGCCTCAGTTCAGCACGAGACCATGCTTGCTCAGGTGCGTAGCGAAAACGTGCTCCTGAGGAAAGAGCTGGCCGAGGCTCAAAAGAAGGGCCTGGCCAAGGAGGAGGCTGTGAGCGCCGTCCAGCGACATCCTTCAGCAACGTCCTTCAGCGTCATCCAGGGAGAGACTAGAGCCGACAGCTGTGAGAGCTTCCAGCTGGTGGATGACAGGATCAGGGAGCTGGTCGTCAAAAACATGGGGCTCCAGGAACACATATTCTTGCTGGAGAACCAGAACTCGGCGAGAGATGATAATGTGAGACATCTGGAGCAGGACCTGGCAGACACTCTGAAGAAACTGTCTCTGTGCAAAGCCTCTCTCGAGGTCAGCATGCACACCAGACGTgacctggaggaggagaaactGCACATGAAAACAGAGATGGACAGCATGAACATTAAGTTGCAGGAAACCCAGGAGCAGTACCTTCAGAACAAGCAGCTCATCAGCGACCTGATGGACACTCTCGATAAGACAGAGCACGAGGTCATCTCGTCTTCCTCGGCCTTTGAGAATATCATCCAGCAGCTGGACGAGCACAAGCAGAGGCTTGAAATGGAAAACACCAGGCTGGAGGCTGCTAACAAACAGCAGGCAGAGCGATTGGAGGAGCTTCAGAAAGATGCTCTAAAGTCTGCAGTGAATCACGCCGCCTCTCAGGAAGCCTTGGAGAGGATTAAAGCCACCAATGATGCCGCACTGGAGCAGAGGATCGCAGACCTGGAGAGTGAGCTCAACAGGGTGTCTGGTGCCCAGCCGGGCACACAGGCCAAGATGGAGTGCTACAAAGAGCTCTACACACAAGAGCTCCAGCTCCGCATGTCCTTAGAGGCCAAACTTGCGAGGTCCAATGAGAGGCCAGATGAGGACAACGCCAGGCAGCTCAGTGTGAATAGAAGCCTCTGTCTCAGAAGACGCTTCCTCGGCCCAGCGGGACACAGGCTTTCTCAGTACCCAGTGGAGGCGGAATTACAGGTTAGCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54146 lncRNA downstream 18659 27126780 ~ 27126988 (-) True G43425
TU54137 lncRNA downstream 86405 27055552 ~ 27059242 (-) True G43417
TU54132 lncRNA downstream 95805 27049568 ~ 27049842 (-) True G43412
TU54130 lncRNA downstream 99084 27046361 ~ 27046563 (-) True G43410
TU54119 lncRNA downstream 150343 26994372 ~ 26995304 (-) True G43400
TU54249 lncRNA upstream 554699 27714039 ~ 27717043 (-) True G43518
TU54335 lncRNA upstream 806672 27966012 ~ 27966233 (-) True G43590
TU54337 lncRNA upstream 901504 28060844 ~ 28061169 (-) True G43592
TU54338 lncRNA upstream 902909 28062249 ~ 28062453 (-) True G43593
TU54342 lncRNA upstream 910798 28070138 ~ 28072787 (-) False G43594
AMCG00013280 mRNA downstream 144190 26999574 ~ 27001457 (-) True AMCG00013280
AMCG00013278 mRNA downstream 238681 26903814 ~ 26906966 (-) True AMCG00013278
AMCG00013279 mRNA downstream 253229 26888488 ~ 26892418 (-) True AMCG00013279
AMCG00013276 mRNA downstream 312958 26830584 ~ 26832689 (-) True AMCG00013276
AMCG00013277 mRNA downstream 324670 26813858 ~ 26820977 (-) True AMCG00013277
AMCG00013295 mRNA upstream 132887 27292227 ~ 27292787 (-) False AMCG00013295
AMCG00013294 mRNA upstream 140487 27299827 ~ 27307855 (-) True AMCG00013294
AMCG00013293 mRNA upstream 176950 27336290 ~ 27339310 (-) True AMCG00013293
AMCG00013297 mRNA upstream 339335 27498675 ~ 27508068 (-) True AMCG00013297
AMCG00013300 mRNA upstream 413575 27572915 ~ 27581176 (-) True AMCG00013300
TU53964 other downstream 588323 26556354 ~ 26557324 (-) True AMCG00013264
TU53711 other downstream 1628684 25516080 ~ 25516963 (-) True G43070
TU53641 other downstream 1978889 25163983 ~ 25166758 (-) False AMCG00013223
TU53623 other downstream 2067403 25075393 ~ 25078244 (-) True G43001
TU53519 other downstream 2116643 25025876 ~ 25029004 (-) False AMCG00013216
TU54172 other upstream 113889 27273229 ~ 27293073 (-) True AMCG00013295
TU54196 other upstream 409424 27568764 ~ 27569151 (-) True G43473
TU54344 other upstream 908873 28068213 ~ 28072787 (-) True G43594
TU54456 other upstream 1307972 28467312 ~ 28467906 (-) True G43684
TU54700 other upstream 2094056 29253396 ~ 29254316 (-) True G43869

Expression Profile