RNA id: AMCG00013293


Basic Information

Item Value
RNA id AMCG00013293
length 522
RNA type mRNA
GC content 0.54
exon number 3
gene id AMCG00013293
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 27336290 ~ 27339310 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTATAAAACGTCATGTAGCCGGCTGACAGATTTCCTTAatggtattgttttgttttgcttcaccCAGTATGTCACAAAAAACACCAGGGAGCTGCGCCAGCGTGCAAAGCCCAAGCAGGAGCCTCTTGAAGACCTGAAGCCCTTCATGCCAGAAGAAACGGTTATTCGGCAGGTGCAACGGATCCCAACCATAAAGCCACCTCCTTCCATCTTGACGGTTCCCACAGAGATCGGCACACAGAGCGACAAGGAGCCGGGCCCCCCCCAGGACTCCCCAGGACCAACCACTCAGGACAAACACGAGGAGAGACAATGGAAGGAGATCAAAGTGAAACTGGACGACCTTCCCGGGATATACTCGAGGCTTTCGAAGATCAGACTCACAGCCCTGGTTGTCACCACGGCATCAGCTGGGTTTGCTTTGGCTCCGGTGCCCTTTGACCTTGGCTGTTTCCTCCTGGCCTCCCTGGGAACCGGCCTTGCTTCCTGTGCTGCCAACTCCATCAACCAGGTCAGTTAG

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016740 transferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54156 lncRNA downstream 177561 27158301 ~ 27158729 (-) True G43435
TU54146 lncRNA downstream 209302 27126780 ~ 27126988 (-) True G43425
TU54137 lncRNA downstream 277048 27055552 ~ 27059242 (-) True G43417
TU54132 lncRNA downstream 286448 27049568 ~ 27049842 (-) True G43412
TU54130 lncRNA downstream 289727 27046361 ~ 27046563 (-) True G43410
TU54249 lncRNA upstream 374729 27714039 ~ 27717043 (-) True G43518
TU54335 lncRNA upstream 626702 27966012 ~ 27966233 (-) True G43590
TU54337 lncRNA upstream 721534 28060844 ~ 28061169 (-) True G43592
TU54338 lncRNA upstream 722939 28062249 ~ 28062453 (-) True G43593
TU54342 lncRNA upstream 730828 28070138 ~ 28072787 (-) False G43594
AMCG00013294 mRNA downstream 28435 27299827 ~ 27307855 (-) True AMCG00013294
AMCG00013295 mRNA downstream 43503 27292227 ~ 27292787 (-) False AMCG00013295
AMCG00013292 mRNA downstream 176950 27145647 ~ 27159340 (-) True AMCG00013292
AMCG00013280 mRNA downstream 334833 26999574 ~ 27001457 (-) True AMCG00013280
AMCG00013278 mRNA downstream 429324 26903814 ~ 26906966 (-) True AMCG00013278
AMCG00013297 mRNA upstream 159365 27498675 ~ 27508068 (-) True AMCG00013297
AMCG00013300 mRNA upstream 233605 27572915 ~ 27581176 (-) True AMCG00013300
AMCG00013303 mRNA upstream 250781 27590091 ~ 27590711 (-) True AMCG00013303
AMCG00013302 mRNA upstream 279463 27618773 ~ 27651553 (-) True AMCG00013302
AMCG00013301 mRNA upstream 333068 27672378 ~ 27680500 (-) True AMCG00013301
TU54172 other downstream 43217 27273229 ~ 27293073 (-) True AMCG00013295
TU53964 other downstream 778966 26556354 ~ 26557324 (-) True AMCG00013264
TU53711 other downstream 1819327 25516080 ~ 25516963 (-) True G43070
TU53641 other downstream 2169532 25163983 ~ 25166758 (-) False AMCG00013223
TU53623 other downstream 2258046 25075393 ~ 25078244 (-) True G43001
TU54196 other upstream 229454 27568764 ~ 27569151 (-) True G43473
TU54344 other upstream 728903 28068213 ~ 28072787 (-) True G43594
TU54456 other upstream 1128002 28467312 ~ 28467906 (-) True G43684
TU54700 other upstream 1914086 29253396 ~ 29254316 (-) True G43869
TU54894 other upstream 2667454 30006764 ~ 30010700 (-) False G44034

Expression Profile