RNA id: AMCG00013295


Basic Information

Item Value
RNA id AMCG00013295
length 561
RNA type mRNA
GC content 0.60
exon number 1
gene id AMCG00013295
representative False

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 27273229 ~ 27293073 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAATATAGCCTGCTTTGTCACTCCCTGTATGCGATTTCATTCAGCCCGGTGAAAAAGAAACTCTTGCTGCTGTGCATCATGCTCCTGCTCTGGGTGTACATGTTATATTCCTGCGTGGGCTACTGCTCCACCATGCCAAGCGTGATGGTGGACTCTTACCGGGGAAAGGAGACTCAGACCGCCGGCAGACGGACGGAGCGCGGCGGGACAGACCTTATGTCCAAGCTGCTCTCCAGACCCCAAGCCTGGGTGGACCTGGAGGCTGATTACGACGAGCCACCGGTCAGGACGGCGTCCAGAGACTTGCTGAATGATGAGCTGGACTCGGACCGAGCGGAGGACTGGGAGCAGCGGTCTCCCGAGCCCAGCGTCCTGTCCAGTTTCTCCAACGGCTCCGGGAGCAAGAAGCTGCCCCAGGCCATCATCATCGGGGTGAAGAAGGGAGGCACCCGCGCCCTGCTCGAGTTCCTCCGGGTGCATCCCGACATCAGGGCCGTGGGAGCCGAGCCGCACTTCTTCGACAGGAACTACGACAACGGGCTGGACTGGTACAGGTAA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0008146 sulfotransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54156 lncRNA downstream 133498 27158301 ~ 27158729 (-) True G43435
TU54146 lncRNA downstream 165239 27126780 ~ 27126988 (-) True G43425
TU54137 lncRNA downstream 232985 27055552 ~ 27059242 (-) True G43417
TU54132 lncRNA downstream 242385 27049568 ~ 27049842 (-) True G43412
TU54130 lncRNA downstream 245664 27046361 ~ 27046563 (-) True G43410
TU54249 lncRNA upstream 421252 27714039 ~ 27717043 (-) True G43518
TU54335 lncRNA upstream 673225 27966012 ~ 27966233 (-) True G43590
TU54337 lncRNA upstream 768057 28060844 ~ 28061169 (-) True G43592
TU54338 lncRNA upstream 769462 28062249 ~ 28062453 (-) True G43593
TU54342 lncRNA upstream 777351 28070138 ~ 28072787 (-) False G43594
AMCG00013292 mRNA downstream 132887 27145647 ~ 27159340 (-) True AMCG00013292
AMCG00013280 mRNA downstream 290770 26999574 ~ 27001457 (-) True AMCG00013280
AMCG00013278 mRNA downstream 385261 26903814 ~ 26906966 (-) True AMCG00013278
AMCG00013279 mRNA downstream 399809 26888488 ~ 26892418 (-) True AMCG00013279
AMCG00013276 mRNA downstream 459538 26830584 ~ 26832689 (-) True AMCG00013276
AMCG00013294 mRNA upstream 7040 27299827 ~ 27307855 (-) True AMCG00013294
AMCG00013293 mRNA upstream 43503 27336290 ~ 27339310 (-) True AMCG00013293
AMCG00013297 mRNA upstream 205888 27498675 ~ 27508068 (-) True AMCG00013297
AMCG00013300 mRNA upstream 280128 27572915 ~ 27581176 (-) True AMCG00013300
AMCG00013303 mRNA upstream 297304 27590091 ~ 27590711 (-) True AMCG00013303
TU53964 other downstream 734903 26556354 ~ 26557324 (-) True AMCG00013264
TU53711 other downstream 1775264 25516080 ~ 25516963 (-) True G43070
TU53641 other downstream 2125469 25163983 ~ 25166758 (-) False AMCG00013223
TU53623 other downstream 2213983 25075393 ~ 25078244 (-) True G43001
TU53519 other downstream 2263223 25025876 ~ 25029004 (-) False AMCG00013216
TU54196 other upstream 275977 27568764 ~ 27569151 (-) True G43473
TU54344 other upstream 775426 28068213 ~ 28072787 (-) True G43594
TU54456 other upstream 1174525 28467312 ~ 28467906 (-) True G43684
TU54700 other upstream 1960609 29253396 ~ 29254316 (-) True G43869
TU54894 other upstream 2713977 30006764 ~ 30010700 (-) False G44034

Expression Profile