RNA id: AMCG00013296


Basic Information

Item Value
RNA id AMCG00013296
length 2832
RNA type mRNA
GC content 0.59
exon number 19
gene id AMCG00013296
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 27548805 ~ 27569295 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGACGACTTGTTTTCAGAAACATATGTGGAGGTGCGGAGAAAAGACGCTCCCGTTTGGGCAGAGAAGACTGAAGTATTAAGTGAAGACCTGTTACAGGTGGAGAAGCGTCTGGAGCTGGTCAAGCAGGTGTCTCACAGCACCCACAAAAAGCTGACAGCATGTCTTCAGGGCCAGCAAGGCGTGGACGTGGACAAGAGATCGGTGCGATCGCCCTCGAAaaagctgccgctgacgtctcTGGCTCAGTGCTTAGAGGAGGGCGCAGCCGTGCTGGGGGAGGACTCCCTGCTAGGGAAGATGCTGATGTTGTGTGGAGAGACGGAGGACAGACTAGCCCAGGAGCTCATCCTGTTTGAGCTGCAGATCGAGAGAGATGTCATCGAACCCCTATATGTATTAGCAGAGCAGTCATCCAAATCCGGCATGTCCAGTACCCTGCAGCCCACGGGTGCCAAAGCTGACGCTCTCAGGGAAGAAATGGAGGAGGCTGCCAACCGGGTGGAGATCTGCAGGgATCAACTGTCAGCTGATATGTACAGTTTTGTGGCCAAAGAAATAGACTATGCAAACTACTTTCAGACATTAATAGAAGTCCAGGCAGATTACCACAGGAAGTCCTTAGCACTTTTACAGAGAGTCCTTCCTCAAATCAAAGCGCATCAGGAGGCCTGGGTCGAGAAGCCCTCCTACGGCAAGTCACTGGATGAACACCTGGCAATAAGCGACCGGGAGATCGCCTTCCCTATTGAGGCCTGTGTGACCATGCTGCTGGAGTGCGGCATGCAGGAGGAGGGGCTGTTCAGAGTGGCACCTTCGGCCTCCAAATTAAAAAAGCTGAAGGCCTCCCTGGACTGTGGGGTGTTGGATGTGCAGGAGTACTCAGCGGACCCCCACGCCATCGCAGgggccCTGAAGTCCTACCTGCGGGAGCTCCCTGAGCCGCTGATGACCTTTGAACTTTATGAAGAGTGGATTCAAGCTTCCAACATTCAGGATCAAGACAAGAGACTGCAGGCCCTGCTCACCGCCTGCGAGAAACTTCCCAAGGCCAACGCCAACAACTTCAGATACTTAATCAAATTTTTAGCCAAGTTAACAGAGTACCAAGATGCAAATAAAATGACGCCAGGAAACATTGCAATAGTCCTGGGACCCAACTTGCTGTGGACGCACACAGAGGGGAACATAACTGAGATGATGACCACGGTGTCCCTCCAGATCGTTGGCATTATCGAGCCAATAATCCAGCATGCTGATTGGTTCTTCCCCGGTGACATAGAGTTCAACGTGAGTGGGAACTACGGCAGCCCCGTCCACATCAACCACAATGCCAACTACAGCTCCATGCCCTCCCCGGACATGGACCACTCTGACCGCAAGCAGCACGACCAGGGCCGGCGGCCGCTCAGCGTGGCCACGGACAACATGATGCTGGAGTTTTACAAGAAGGACGGCATGGGTGTCCGGGTGATGGACACATCTTGGGTGTCTCGCAGGGGCTCGTCTTTAGTGCGCAAGACGTCCTCCACCCCTCCGAGCGTGCAGCCCCCGGCGCCCCCAGCCGAGCTGGcgtctctgtctcagtcgctCATCCCAGAGCAGCCGAACGAGCTCTccgcctccccctcccccacccctcctgcTAGCGGTGGCAGTGGCGACAGGGCCAGCGCCGACGACGTGTCGTCCAATTGGTCGGACTCCTGTTACGCCTATCCTTCCCCTGAGGATGACAGGCCCCCCCCACCTTACCCCTCCTGCTACCCCACCTCCCACCATTACTACCCCAAGGCACAGCCCTGCGCACGGCCTGTTGCTCCCGGACCGGAGTCTGTATCCTCCCCTATCCGGTGGACAGGCTACAGCCCCCCGCTCCCcccgccctcctcctcctcctctccctccccccagcAGCTTGACATCAACTCTAACCCCAAGCCCAGCTTCCTCCACCTCCCCAAGCAGAGCTCCCTCACCGACGCACCGCATGCCACCCCCGAAACTAACGTGTCACCCCTCTACATCAAAACCCCCCTTGTGCTAACCAAACACGACCCGTCCTTCGGCACCCCCCCTAACCTGCCCCCGTCAGCCTCTCCCCAGTGGGGCAGCTGTGCCTGTAGCCGAGAGAGAGGAACCAGGCTGACTAGTACCTTGAAGAGCAAAGAGCTCTCTCCTGTGATTGGACAGAAGGGAGTTCAGGGTTCGGGTTCCATGGTAACCGCAGCCAGCGTCCAGCAGAGCATCGGCCAGGGCCAACTCACGACTGACCAGAGCCCACACTCCCTGCGCAAAGTCTCTGCAGTGTCCAAGAAGCTGGCCCCGATCCCACCCAAGGTGCCCTACGGCCAATCGGGGGGGATGTCAGATCAGTCGACAGGTCAGCCGTCTCCCGTTAGCCTGTCCCCCACCCCTCCCAGCACCCCTTCCCCGTACGGACTCAGCTACCCCCAGGGGTATGCCACCATGTCGTCTCCAGGACAGATCTCTCCGGCGGCGCCCCCGTCCCTCTCCTCCCCGCCCTCCCTGACCGGCACGCTCACCAAGTCCCGGCCCACCCCCAAGCCCCGGCAGAGGCCCAGCCTGCCCCCACCCCAGCCGCCCATCGCCCCCGGCCTGTCGGGCTCCAGCCCACAGTCTCTGGACCACGCCATGCTCGACGGCATGTCTCCCGGGGAAAGCATGTCTACAGGTAAACACGTCTCTCCCACAGCCAGGCCGGGCGCGCACCGGCCTCCACCGCCATGGTTTCTCGTGTTCGTGATTTTTATTGTGTCTCTGTTCCATCTCAGTCCATGTAGCGACAAGCAATGTTACTCGTCACTCTGA

Function

GO: NA

KEGG:

id description
K21067 ARHGAP44, RICH2; Rho GTPase-activating protein 44

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54159 lncRNA upstream 131018 27270028 ~ 27417787 (+) True G43438
TU54122 lncRNA upstream 538154 27010372 ~ 27010651 (+) True G43402
TU54027 lncRNA upstream 618552 26872821 ~ 26930253 (+) True G43326
TU54034 lncRNA upstream 625666 26892614 ~ 26923139 (+) False AMCG00013281
TU54035 lncRNA upstream 643842 26897509 ~ 26904963 (+) True AMCG00013286
TU54325 lncRNA downstream 499351 28068646 ~ 28072799 (+) True AMCG00013317
TU54444 lncRNA downstream 820394 28389689 ~ 28389960 (+) True G43673
TU54481 lncRNA downstream 1111515 28680810 ~ 28682174 (+) True AMCG00013336
TU54482 lncRNA downstream 1111515 28680810 ~ 28682174 (+) False AMCG00013336
TU54489 lncRNA downstream 1168828 28738123 ~ 28738753 (+) True G43712
AMCG00013298 mRNA upstream 162178 27386091 ~ 27386627 (+) False AMCG00013298
AMCG00013288 mRNA upstream 408206 27130164 ~ 27140599 (+) True AMCG00013288
AMCG00013287 mRNA upstream 431368 27111850 ~ 27117437 (+) True AMCG00013287
AMCG00013283 mRNA upstream 489884 27036615 ~ 27058921 (+) True AMCG00013283
AMCG00013291 mRNA upstream 550125 26981675 ~ 26998680 (+) True AMCG00013291
AMCG00013299 mRNA downstream 23480 27592775 ~ 27609468 (+) True AMCG00013299
AMCG00013307 mRNA downstream 242398 27811693 ~ 27814163 (+) True AMCG00013307
AMCG00013308 mRNA downstream 305198 27874493 ~ 27875484 (+) True AMCG00013308
AMCG00013310 mRNA downstream 359413 27928708 ~ 27935009 (+) True AMCG00013310
AMCG00013311 mRNA downstream 367118 27936413 ~ 27946835 (+) True AMCG00013311
TU54169 other upstream 133519 27385665 ~ 27415286 (+) True AMCG00013298
TU54155 other upstream 390084 27158302 ~ 27158721 (+) True G43434
TU54005 other upstream 737190 26808164 ~ 26811615 (+) True G43309
TU53939 other upstream 1008756 26524826 ~ 26540049 (+) True G43263
TU53847 other upstream 1290963 26254979 ~ 26257842 (+) False AMCG00013255
TU54201 other downstream 19844 27589139 ~ 27590818 (+) True G43476
TU54319 other downstream 364779 27934074 ~ 27935938 (+) False AMCG00013310
TU54454 other downstream 914978 28484273 ~ 28488783 (+) True G43682
TU54615 other downstream 1534994 29104289 ~ 29104577 (+) True G43802
TU54772 other downstream 2071328 29640623 ~ 29658948 (+) False AMCG00013364

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00052066 True 2877 mRNA 0.55 20 NC_007114.7 48638594 ~ 48716422 (-)
grasscarp (Ctenopharyngodon idella) CI01000033_01119076_01152170.mRNA False 2665 mRNA 0.52 19 CI01000033 1118929 ~ 1152170 (-)