RNA id: AMCG00013299


Basic Information

Item Value
RNA id AMCG00013299
length 3075
RNA type mRNA
GC content 0.46
exon number 9
gene id AMCG00013299
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 27592775 ~ 27609468 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGCTATGGTCCTACATCTTTCCTATTCATTTTCTGTCAACAGACAAATGTATACGGGGGGGCGgggtattatttttaaatacaatgaatgCATTAGTGCTGTAACCATAGACATTCCCGGCAATGCCGCCTGTACTAGCCTATAGGAAACCATGAGGCGCACAACCCCGACGCCCAGGAAGCGTGTGATTCCAGCCACTCTGCGCTTGCGTCATCGCCACAGTCACTGCGTCACTGCGTCACTGCGTCAGAGACGTAACGACGCGCCCCCGCGTGCGTGCGTGAGTGCGTGCGGAAGCCTGTGACCGCGGAGTCGGGCTGGAGCTTCGGATCTCAAACAGCGCGGCGAGCGGCGGGGCAGCACCGACACCCGGACGGATACACAGCGACCGCGGCTGGCAATGCTCAGgTTTGTTTACCATGGACACAGAGATGATACCAAAATTCTCTTCCAAAGACGAGGAAATTGATTACTGGAAGTCGCGCAGcttgaaatacaaaaagagTTACCAGGAAGCCCACGAGGAGCTGCTGGAGTTCCAGGAAGGCAGCCGTGAACTGGAAGCCGAGTTGGAGGCGCAGCTGGGCCAGGCCGAGCACCGCATCCGAGACCTGCACGCAGACAACCAAAGACTGAGAAACGAGGTGGAGACACTAAAGGAAAAGCTGGAGCAGCAGTACTCCCAGAGCTACAAGCAGATCTCCATGCTCGAGGATGACCTGGGGCAGACGAGGGCCATCAAAGAACAGCTTCACAAGTACGTGAGGGAGCTGGAGCAAGCCAATGATGACCTGGAGCGAGCCAAGAGGGCAACGATCGTGTCTCTAGAAGACTTCGAGCAGAGACTCAACCAGGCCATTGAGAGGAACGCCTTCTTAGAAAGTGAACTGGATGAGAAAGAGTCGCTCTTGGTGTCGGTCCAGAGATTAAAGGATGAAGCCAGGGACCTGCGCCAGGAACTGGCCGTGCGGGAGAGACAGACGGACGTGACGAGGATGTCCGCGCCCAGCTCGCCCACGCTGGACAATGACAAGATGGACTCTGCGGTCCAGGCGTCCCTCTCATTGCCAGCCACCCCCATAGGGAAGAGCATGGACAACGGCTTCAGCAGCCCCAAAGTAATACCAAATGGATGTGGCAACTCACCCTTAACCCCGTCGGCGAGAATATCAGCTCTTAACATCGTTGGGGATCTTCTAAGGAAAGTAGGGGCATTAGAGTCCAAGCTAGCAGCCTGCAGGAACTTTGCCAAGGACCAGGCATCAAGGAAGACCTACTCGTCAGGAAACAGCAACCTGATCAACAGCAACAGCACGAAGTTCTCCCACTCGCTGCAAACGACATACTTCGATAAAGCGGCAGTGAACGGACTCGACCCCGGGTCCTTGGCAGGAATCGGGTCACCGCGCTCTGCGTCTCCACCTGGCATGCTGCCCCTTAGCGTCTGACGAAGCCATACCCTCACCGGACCCCCACCTTACTGACGGAACAAGGGAACAGGCTGAGCTTTGAAGGACATGTTTCACTTACTGAGCTGCAGCACTAAAAGACTTAAAGCATCGCTCTCCTGACCACAAGCTCTTCAGactccctttttttttccagttcatCATTGTTCCTTCCACTATCCGTCTGTCCTCGCTAACGGTCTCATCCTTTTGTTTCCCAGCGAGCTGCGTCCTCGAGCGACGTCACAGTTCTGCTCGCCGTTACAATCATAACCGTTTTATTCCCAACGATGCTCCTCCGCGGACTgtagcatttgttttacatgaacctgaaaagaaaaaaatatttatatttttgaatactatgttgtaaaaaacaaaaaacaaaaaaaaagaaaacaaaaaaagggatTTCATTTAAGCACTTGATTTCGTTtcgttttgtatttgtactgtagTTTGTTGGGAAGGGAGCGCGGAGATGAAGAGGAGGTCCTGATCACTTCAAGTTTGGATGATTTtgagcacattttattttttcacggTTGCTGCTAAGGAAACTTGCATTGAGATGCAGATGTTGCTTTCCCCTCTTTTTATTCAAAAACAGCGGGACACTAGAAACACCAAAAACAGAAGGTACAAAAGTTTGATTCAGATTCTCCCGGTGTCTAGTGACCTGCAAAGCATTACCACGTGGatttgcacttttttgttttaggttttgatGAACAGAACTGTGGTTTCTGGCCTAAGttacaaccaaacaaacatgtttttttcccttctctttgTGTATTTAGTGTAACAGCCAATTCTACAAATAAAGTGAcggttacatttaaaaaccgtGCTTGAATTGTAGCTCAATATGCTTGTGACGGACTGATATACATGTAGTTCATTAGGTCCTGAAACCCATTCAGGACAAACCAAATGACATCGAGGAGGAGAAGAGGTTTGTCGCCCAGCCGCCCACCGTCTCACCCCTTTGGAATTTGATTGTTAAAACAGTATTGGAAACCCTTGACTGTAATATAGTCCGTTCTAATTTTCAGtgtcatttaataaatattaatgtgctGTGACTAATTCTTTGCCACTTCTACACTTTGTGTTAATGAGAACTTTGTAATTGTGTAAATCTCTTGTTTTAATGTGCCTCTCGTTAGGGTGGGTTTGAAattcaccttttttttctttgtgtgtgaaaaatCACAGTCCTCTCTGTTTGGTTACTTAAAGGTTTACAGTGGAAGCATTTTAGACGACGTACTTGTGTCAATTGGTTGATCTGAAACTAATTTGAAGCACCGGAGTCATTCCCAATTttgattttacacattttgttcattCACACAAGATTGCTGTTGATATGTTTCAGTGTATATAGGTTTATAAGCATAGTAACTTTGCCTAagatgtttgtgtatatgtgtgtaatatatatatatatatatatatacaccaactTGGGCTTTctggctttatttattcagattcCTTATATGGCATGTGTTGAAATGAGAGTGTATTATAATACAGTTGTAACAGATCATATATCATAATGTAGAATCGGCTGTCTAATCTGTTTAAAACctgacaataaaaaacatttttgaaagtt

Function

GO:

id name namespace
GO:0006810 transport biological_process
GO:0005815 microtubule organizing center cellular_component
GO:0005819 spindle cellular_component
GO:0005874 microtubule cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K16739 NDEL1; nuclear distribution protein NudE-like 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54159 lncRNA upstream 174988 27270028 ~ 27417787 (+) True G43438
TU54122 lncRNA upstream 582124 27010372 ~ 27010651 (+) True G43402
TU54027 lncRNA upstream 662522 26872821 ~ 26930253 (+) True G43326
TU54325 lncRNA downstream 459178 28068646 ~ 28072799 (+) True AMCG00013317
TU54444 lncRNA downstream 780221 28389689 ~ 28389960 (+) True G43673
TU54481 lncRNA downstream 1071342 28680810 ~ 28682174 (+) True AMCG00013336
TU54482 lncRNA downstream 1071342 28680810 ~ 28682174 (+) False AMCG00013336
TU54489 lncRNA downstream 1128655 28738123 ~ 28738753 (+) True G43712
AMCG00013296 mRNA upstream 23480 27548805 ~ 27569295 (+) True AMCG00013296
AMCG00013298 mRNA upstream 206148 27386091 ~ 27386627 (+) False AMCG00013298
AMCG00013288 mRNA upstream 452176 27130164 ~ 27140599 (+) True AMCG00013288
AMCG00013287 mRNA upstream 475338 27111850 ~ 27117437 (+) True AMCG00013287
AMCG00013283 mRNA upstream 533854 27036615 ~ 27058921 (+) True AMCG00013283
AMCG00013307 mRNA downstream 202225 27811693 ~ 27814163 (+) True AMCG00013307
AMCG00013308 mRNA downstream 265025 27874493 ~ 27875484 (+) True AMCG00013308
AMCG00013310 mRNA downstream 319240 27928708 ~ 27935009 (+) True AMCG00013310
AMCG00013311 mRNA downstream 326945 27936413 ~ 27946835 (+) True AMCG00013311
AMCG00013312 mRNA downstream 342915 27952383 ~ 27953343 (+) True AMCG00013312
TU54201 other upstream 1957 27589139 ~ 27590818 (+) True G43476
TU54169 other upstream 177489 27385665 ~ 27415286 (+) True AMCG00013298
TU54155 other upstream 434054 27158302 ~ 27158721 (+) True G43434
TU54005 other upstream 781160 26808164 ~ 26811615 (+) True G43309
TU53939 other upstream 1052726 26524826 ~ 26540049 (+) True G43263
TU54319 other downstream 324606 27934074 ~ 27935938 (+) False AMCG00013310
TU54454 other downstream 874805 28484273 ~ 28488783 (+) True G43682
TU54615 other downstream 1494821 29104289 ~ 29104577 (+) True G43802
TU54772 other downstream 2031155 29640623 ~ 29658948 (+) False AMCG00013364
TU54850 other downstream 2311599 29921067 ~ 29928697 (+) False AMCG00013375

Expression Profile