RNA id: AMCG00013302


Basic Information

Item Value
RNA id AMCG00013302
length 4971
RNA type mRNA
GC content 0.60
exon number 34
gene id AMCG00013302
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 27618773 ~ 27651553 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tttctcagAGGTGAATCGGGTGCTGGTAAGACGGAAAACACCAAAAAAGTCATACAGTACCTGGCTCACGTTGCTTCCTCCCATAAAGGCAGGAAGGACCATAACATTCCCGGTGAACTGGAACGACAGCTTTTGCAAGCCAATCCCATCCTCGAGTCCTTTGGCAATGCCAAGACGGTGAAAAATGACAACTCTTCACGCTTCGGGAAGTTCATTAGAATCAACTTTGACGTCACTGGTTACATTGTGGGGGCCAATATCGAGACCTATCTGCTGGAGAAGTCGAGAGCCATTCGCCAAGCCAAAGATGAGAGGACTTTCCACATCTTCTACCAGTTGCTGGCTGGCGCTGGAGAACACCTGAAATCCGACTTGTTGCTGGACGGGTTTAACAGCTATCGCTTCCTGTCCAATGGGAACATTCCCATCCCAGGGCAACAGGACAAGGACAACTTCCAGGAGACCATGGAAGCCATGCACATAATGAGCTTCTCCCACGAAGAGATCCTGTCGATGCTCAAAGTGGTCTCCTCCGTCCTGCAGTTTGGCAACATCATCTTCAAGaaggagagaaacacagaccagGCTTCCATGCCAGAAAACACAGcggCGCAGAAGCTGTGTCACCTGCTGGGGTTGAATGTGATGGAGTTCACACGGGCCATCCTGTCGCCTCGCATTAAGGTCGGCAGGGACTATGTACAGAAAGCACAGACCAAAGAACAGGCGGACTTTGCCGTCGAGGCCCTGGCCAAAGCCACATACGAGCGTCTCTTCCGCTGGCTGGTCCACCGCATCAACAAAGCCCTGGACAGGACCAAGCGCCAGGGGGCCTCATTCATCGGCATCCTGGACATCGCCGGCTTCGAGATCTTTGAGGCTAACCCCCCTGGCGTGCTCGCCCTGCTGGACGAGGAGTGCTGGTTCCCCAAGGCCACCGACAAGACCTTCGTGGAGAAGCTGGTGCAGGAGCAGGGCACACACCCCAAGTTCCAAAAGCCCAGGCAGCTGAAAGACAAGGCCGACTTCTGCATCATCCACTACGCCGGCAAGGTGGACTACAAAGCAGATGAATGGCTGATGAAGAACATGGACCCCCTCAACGACAACGTGGCCACTCTCCTGCACCAGTCCACAGACAAATTTGTTGCAGAGCTGTGGAAGGACGTGGACCGCATCGTCGGTCTGGACCAGGTGGCCGGGATGAACGAGACCACGTTCGGCTCGTCTTACAAGACCAAGAAGGGCATGTTCCGCACTGTGGGGCAGCTGTACAAGGAGTCGCTGACCAAGCTGATGGCCACGCTGCGCAACACCAACCCTAACTTCGTGCGCTGCATCATCCCCAACCACGAGAAGCGGATCCTCACCCCAAATGCTATTCCCAAAGGCTTCATGGATGGCAAGCAAGCCTGCGAAAGGatgATCCGGGCCCTAGAACTGGACCCCAACCTGTACAGGATCGGCCAGAGCAAGATCTTCTTCCGGGCGGGAGTCCTGGCTCACCTGGAGGAGGAGCGGGACCTGAAGATTACAGACATCATCATTTACTTCCAGGCCGTCTGCCGGGGCTACCTGGCCCGCAAGGCGTTTGcgaagaagcagcagcagctcagcGCCCTGAAGGTCCTCCAGCGAAACTGTGCAGCGTACCTTAAACTGCGGCACTGGCAGTGGTGGAGGCTCTTCACCAAGGTGAAGCCCCTGCTACAGGTGACCaggcaggaggaggagatgcaGGCGAAGGATGAGGAGCTGGTCAAAGTGAAGGAGAAGCAGATCAAGGTGGAGGGAGAGTTGGTGGAAATGGAGAGGAAGCACCAGCAGCTCGTGGAGGAGAAGAACATCCTGGCGGAACAGCTGCAGGCCGAGACAGAGCTCTTTGCCGAGGCGGAGGAGATGCGCGCCCGCCTGGCCGCCAAGAAGCAGGAGCTTGAGGAGATCCTACATGACCTGGAGTCCcgtgtggaggaggaggaggagcgcaGCCTGTCCCTACagaatgagaagaagaagatgcAGACGCACATCCAGGACCTGGAGGAGCAGCTGGACGAGGAGGAGGCTGCCCGGCAGAAGCTGCAGCTGGAGAAGGTGACGGCCGAGGCCAAGATCAAGAAGATGGAAGAGGACATCTTGCTGCTGGAGGACCAGAACTCCAAGTTCTTGAAGGAGAAGAAGCTGCTCGAGGACCGCGTGGGTGAGATGACCTCTCAGCTCaccgaggaggaggagaaagccAAGAACCTGGGCAAGCTGAAGAACAAGCAGGAGATGATGATCGTGGACCTGGAAGAGCGTctgaagaaggaggagaagacgCGCCAGGAGCTGGAGAAAGCCAAGCGCAAGCTGGACGGGGAGACGACCGACTTGCAGGATCAGATCGCGGAGCTGCAGGCCCAGATCGAGGAGCTCAAGATCCAGCTGGCCAAGAAGGAGGAGGAGCTACAGGCGGCGCTGGCCAGGGGGGACGAGGAGGTGGCCCAGAAGAACAATGCCCTGAAGCAGGTGCGTGAGCTGCAGGCCCAGCTGGCCGAGCTGCAGGAGGACCTGGAGTCGGAGAAGACGGCGCGCAACAAGGCCGAGAAGCTCAAGAGGGACCTGAGCGAGGAGCTGGAGGCCCTGAAGACGGAGCTGGAGGACACGCTGGACACCACGGCAGCGCAGCAGGAGCTCAGGACCAAGCGTGAGCAGGAAGTGGCTGAGCTGAAGAAGGCAATCGAGGAGGAGACCAAGAACCACGAGTCGCAGATCCAGGAGATGAGGCAGAGACACTCGACTGCCCTGGAGGAGCTTTCGGAGCAGCTGGAGCAGGCCAAGAGGttcaaGTCGAACCTGGAGAAGAACAAGCAGACCCTGGAGAGCGACAACAAGGAGCTGGCCAGCGAGGTGAAGGGGCTGCAGCAGTCCAAGGCCGAGTCGGAGCACAAGAGGAAGAAGCTGGAGGCACAGCTGCAGGAGTTCATGGCCAGAGTCACCGAGGGCGAGCGGTCCAAGATTGAGCTAGCCGAGAAGTCCCACAAGCTGCAGAATGAGCTGGACAATGTCTCCACTCTCCTGGAAGAGGCTGAGAAGAAGGGAATCAAGCTGGCCAAGGACGCGGCAAGTCTGGAGTCACagctgcaggacacacagGAGCTGCTACAGGAGGAGACGCGCCAGAAGCTGAACATGAGCAGCCGCATCCGGCAGCTGGAAGAGGAGAAGAACACCctgcaggagcagcaggaggaggaggaagaggcgCGCCGCAACTTGGAGAAGCAGCTGGCCTCCCTGCAGGCTCAGCTGCTGGAGACCAAGAAGAAGCTGGAGGAGGACGTGGGCACGATGGAGGGGCTGGAGGAGGTGAAGAAGAAGCTGCAGAAAGACATGGAGAGCACCACCCAGAGGCTGGAGGAGAAAGCCATGGCCTTTGACAAGATGGAGAAGACCAAGAACCGACTGCAGCAGGAGCTGGATGACCTCATGGTGGACCTGGACCACCAGAGACAGATCGTCTCCAACCTGGAGAAGAAGCAAAAGAAGTTTGACCAGATGCTGGCCGAGGAGAAGAACATCTCGGCGCGCTACGCAGAGGAGCGCGACCGTGCGGAAGCCGAGGCGCGGGAGAAGGAGACCAAGGCGTTGTCGCTGGCCCGCGCACTGGACGAGGCGTTGGAGGCCAAGGAGGAGTTCGAGAGGCTCAACAAGCAGCTGCGCACAGAGATGGAGGACCTGATGAGCTCCAAGGATGACGTCGGCAAGAACGTCCACGAGCTGGAGAAGTCAAAGCGCACGCTGGAGCAGCAGGTGGAGGAGATGCGCACGCAGCTGGAGGAGCTCGAGGATGAACTTCAAGCCACCGAGGACGCCAAGCTGCGGCTGGAGGTCAACATGCAGGCCATGAAGGCGCAGTTTGAGAGGGACCTGCAGGCGCGCGATGAGCAGAACGAGGAGAAGAAGAGGATGCTGGTCAAACAGGTGCGTGAGATGGAGGCCGAACTGGAAGACGAGCGCAAGCAGAGGGCCTTGGCGGTGGCAGCCAAGAAGAAGATGGAGATGGACCTGAAGGACCTGGAGGCTCAAATCGAGGCGTCCAACAAGGCCCGGGACGAGGCCATCAAACAGCTGCGCAAGCTGCAGGACCTGGCTGCATCCGAGAGAGGCCGGCGCCACGCGGAACAGGAGCGGGATGAGCTGGCCGACGAGATCTCCAACAGCGCCTCTGGAAAGTCCGCCCTGTTGGACGAGAAGCGCCGGCTGGAGGCTCGCATCGcacagctggaggaggagctggaggaggagcagagCAACATGGAGCTGCTGAACGACCGCTTCCGCAAGACCACCATGCAGGTGGACACCCTGAACACAGAGCTGGCGGGCGAGCGCAGCGCCGCGCAGAAGAGCGAGAACGCCCGGCAGCAGCTGGAGCGCCAGAACAAGGAGCTGAAGGCCaagctgcaggagctggagggCTCGGTCAAGTCCAAGTTCAAGGCCACCATCACCGCGCTGGAGGCCAAGATCGCACAGCTGGAGGAACAGCTGGAGCAGGAGGCCAAGGAGAGAGCCGCTGCCAACAAGGTTGTCCGCCGCACCGAGAAGAAGCTGAAGGAGGTTTTCATGCAGGTGGAGGATGAGCGCCGCCACGCGGACCAGTATAAGGAGCAGATGGAGAAAGCCAATTCCCGGATGAAGCAGCTGAAGCGGCAgctggaggaggcagaggaggaggcgACCCGGGCCAACGCCTCGCGCCGCAAACTGCAGAGGGAGCTGGACGACGCCACCGAGGCCAGCGAGGGGCTGAGCCGCGAGGTCAACACGCTCAAGAGCCGCCTGCGGCGTGGCGGCCCCATCAGCTTCTCCTCCAGCCGCTCCGGCCGCCGGCAGCTCCAAATCGAAGGCGCCTCCATGGAACTCTCGGACGACGACGCCGACAGCAAGGCCAGCGACGTCAACGAGACGCAGGCCTCCCAAGAG

Function

GO:

id name namespace
GO:0016459 myosin complex cellular_component
GO:0005524 ATP binding molecular_function
GO:0003774 motor activity molecular_function
GO:0003779 actin binding molecular_function

KEGG:

id description
K10352 MYH9s; myosin heavy chain 9/10/11/14

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54156 lncRNA downstream 460044 27158301 ~ 27158729 (-) True G43435
TU54146 lncRNA downstream 491785 27126780 ~ 27126988 (-) True G43425
TU54137 lncRNA downstream 559531 27055552 ~ 27059242 (-) True G43417
TU54132 lncRNA downstream 568931 27049568 ~ 27049842 (-) True G43412
TU54130 lncRNA downstream 572210 27046361 ~ 27046563 (-) True G43410
TU54249 lncRNA upstream 62486 27714039 ~ 27717043 (-) True G43518
TU54335 lncRNA upstream 314459 27966012 ~ 27966233 (-) True G43590
TU54337 lncRNA upstream 409291 28060844 ~ 28061169 (-) True G43592
TU54338 lncRNA upstream 410696 28062249 ~ 28062453 (-) True G43593
TU54342 lncRNA upstream 418585 28070138 ~ 28072787 (-) False G43594
AMCG00013303 mRNA downstream 28062 27590091 ~ 27590711 (-) True AMCG00013303
AMCG00013300 mRNA downstream 37597 27572915 ~ 27581176 (-) True AMCG00013300
AMCG00013297 mRNA downstream 110705 27498675 ~ 27508068 (-) True AMCG00013297
AMCG00013293 mRNA downstream 279463 27336290 ~ 27339310 (-) True AMCG00013293
AMCG00013294 mRNA downstream 310918 27299827 ~ 27307855 (-) True AMCG00013294
AMCG00013301 mRNA upstream 20825 27672378 ~ 27680500 (-) True AMCG00013301
AMCG00013304 mRNA upstream 36312 27687865 ~ 27707372 (-) True AMCG00013304
AMCG00013309 mRNA upstream 92485 27744038 ~ 27745915 (-) True AMCG00013309
AMCG00013305 mRNA upstream 98079 27749632 ~ 27767228 (-) True AMCG00013305
AMCG00013306 mRNA upstream 122710 27774263 ~ 27788468 (-) True AMCG00013306
TU54196 other downstream 49622 27568764 ~ 27569151 (-) True G43473
TU54172 other downstream 325700 27273229 ~ 27293073 (-) True AMCG00013295
TU53964 other downstream 1061449 26556354 ~ 26557324 (-) True AMCG00013264
TU53711 other downstream 2101810 25516080 ~ 25516963 (-) True G43070
TU53641 other downstream 2452015 25163983 ~ 25166758 (-) False AMCG00013223
TU54344 other upstream 416660 28068213 ~ 28072787 (-) True G43594
TU54456 other upstream 815759 28467312 ~ 28467906 (-) True G43684
TU54700 other upstream 1601843 29253396 ~ 29254316 (-) True G43869
TU54894 other upstream 2355211 30006764 ~ 30010700 (-) False G44034
TU54953 other upstream 2429483 30081036 ~ 30083345 (-) False AMCG00013386

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00062350 False 5961 mRNA 0.52 41 NC_007117.7 7555614 ~ 7657019 (+)