RNA id: AMCG00013303


Basic Information

Item Value
RNA id AMCG00013303
length 621
RNA type mRNA
GC content 0.57
exon number 1
gene id AMCG00013303
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 27590091 ~ 27590711 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTCTTGGACGGAGACGTCAGCATGTCTGCAGGCGAGAGCCAGTCTCCCCGAGAGGGGTTGAACTCTGATGAGTGTCCCGTGTGCTATGAGAGCCTCCAGACCTCCAAGAGGAAACTGAGCTGCGGACACGTCTTCTGCCACGACTGCCTGGCCAAGACACTGTCCAGCGCCAACAAAGATGGGACCATCACCCGAGAGAGCATCAACTGCCCCATGTGCAGGCACCTGACTTTTCTCATCAAACAGCCCTTGCACACCTGCACCCAGGACGAGCAGACTCTGCAGGTCCATGTCTGTCGTCCGTCCACATCAGATCCGTCCTGTGTCGTCCAACCACCAGCCTCGCATCACCTCGCCCAGTTTTTCGGACCGGCCTCTTTGGACAGCTCCGTCTCCAGACCTACCATCACAGctgattttcagatttttacCATTAGTGGCCAAGGTCGACCCATGGGGGCTGAGGACGTGTTCACAGTGGGCGGGCAGGCTGTCGTACTAGGACGCAGAAGAGGAGCGAGGTGCTGCCCGGTTGCCCGCTCTGTGGTTGGCGTGGTTATTTTGGCACTGGTGATGGCAGCAATAATTGTCGCAATACCTTGGATAGAACCGCGGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54156 lncRNA downstream 431362 27158301 ~ 27158729 (-) True G43435
TU54146 lncRNA downstream 463103 27126780 ~ 27126988 (-) True G43425
TU54137 lncRNA downstream 530849 27055552 ~ 27059242 (-) True G43417
TU54132 lncRNA downstream 540249 27049568 ~ 27049842 (-) True G43412
TU54130 lncRNA downstream 543528 27046361 ~ 27046563 (-) True G43410
TU54249 lncRNA upstream 123328 27714039 ~ 27717043 (-) True G43518
TU54335 lncRNA upstream 375301 27966012 ~ 27966233 (-) True G43590
TU54337 lncRNA upstream 470133 28060844 ~ 28061169 (-) True G43592
TU54338 lncRNA upstream 471538 28062249 ~ 28062453 (-) True G43593
TU54342 lncRNA upstream 479427 28070138 ~ 28072787 (-) False G43594
AMCG00013300 mRNA downstream 8915 27572915 ~ 27581176 (-) True AMCG00013300
AMCG00013297 mRNA downstream 82023 27498675 ~ 27508068 (-) True AMCG00013297
AMCG00013293 mRNA downstream 250781 27336290 ~ 27339310 (-) True AMCG00013293
AMCG00013294 mRNA downstream 282236 27299827 ~ 27307855 (-) True AMCG00013294
AMCG00013295 mRNA downstream 297304 27292227 ~ 27292787 (-) False AMCG00013295
AMCG00013302 mRNA upstream 28062 27618773 ~ 27651553 (-) True AMCG00013302
AMCG00013301 mRNA upstream 81667 27672378 ~ 27680500 (-) True AMCG00013301
AMCG00013304 mRNA upstream 97154 27687865 ~ 27707372 (-) True AMCG00013304
AMCG00013309 mRNA upstream 153327 27744038 ~ 27745915 (-) True AMCG00013309
AMCG00013305 mRNA upstream 158921 27749632 ~ 27767228 (-) True AMCG00013305
TU54196 other downstream 20940 27568764 ~ 27569151 (-) True G43473
TU54172 other downstream 297018 27273229 ~ 27293073 (-) True AMCG00013295
TU53964 other downstream 1032767 26556354 ~ 26557324 (-) True AMCG00013264
TU53711 other downstream 2073128 25516080 ~ 25516963 (-) True G43070
TU53641 other downstream 2423333 25163983 ~ 25166758 (-) False AMCG00013223
TU54344 other upstream 477502 28068213 ~ 28072787 (-) True G43594
TU54456 other upstream 876601 28467312 ~ 28467906 (-) True G43684
TU54700 other upstream 1662685 29253396 ~ 29254316 (-) True G43869
TU54894 other upstream 2416053 30006764 ~ 30010700 (-) False G44034
TU54953 other upstream 2490325 30081036 ~ 30083345 (-) False AMCG00013386

Expression Profile