RNA id: AMCG00013304


Basic Information

Item Value
RNA id AMCG00013304
length 2614
RNA type mRNA
GC content 0.59
exon number 7
gene id AMCG00013304
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 27687865 ~ 27707372 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTGTTTCCCAGATGTCGTGTCCAGAGCGGCGAGGAATCCAGAAGGCACTCGATGGAGACCACTGCGCTGGGGGGGGGAGCGATGCAGAGGCGGTCAGGAGGCCTTTCAAGTTGCTTCCCGTCTCCGCTGACATTTCCCGAGGTTTGCCAAGCAAGGGTGACACTGGGGGGGAGGTTCCTATTCCTGTTCTCAAGGAGGCGCTACCCTTCAGTTGACCAGCAGGACTGCAGCTCCCAGTCTGAAGCCCTTCAGCAATTAGTTGCAGCTGTCAGTGGGGACAGTCCGGAGCAGGAGGACGCTGCGGACCCTCAGGCTGATGGGACACAGCCGCCTCTCTCTAGCCCTGAAGCGGAGCGGCCTCCCTCCTGCACGGCCCCGGATCCCAATACAAAGGGCGATGAGGTGACCCAGGAGGACCCGAGCGACGGTGATTTGACCAGGCACAGCTTTGAACTTCACAAGGTCGTTGTGGACGTCACGAGCTGCGTCCTGTGGCACCTGTGCCCCCAGAGGGGTCTGCCTGTGAAGCTGATGAACCGTCTTCTGAGTGAAGTCCTGGAACTCCTCCACAGCTCACCAGACTGTACAGATCTCTTAGGGTTTCTGAGAGACAGCCAAAACATCTGCTCTCTCAGCGACCCAGTGTACGACTGTGTGTCCCCCGTGCTACGGGAGCTGCAGGAGCCTCCGCCTCTGAACAACTTGAACGCCCTGGTCCAGAGCCCGGAACTGCAGCGGAGAGTGGTCAGTGTGGTGGCAAAGAACCTGCTGGGCTTGACCCCTAGCAAGGCGGAGCCTGTGTGTGCTGATGACAGCTGCACTGACGAACAGAGAGGGGCCTGTCTGGGGGCCAGGGAACGTCAGTCCAGCACCAGGACGACACCCATCATCGTCAGGGAGGCACAGCCGGACAGGAGGGTGTCTCTGCCCATGGCGCCAGAGGCACTGAGTGCCAGCCTGCCACCTCACTGCCCCTCCGTCACACCTGAACGGTTGGCCAGCGCCAAGATGTCACCCATGTCACCCACCGTTGTCAGGGAGGCTCAGCTGGAAAGGAGGGCATCTCTACCTGAGGCACTGGAGATGCTGAGCACCAGCCTGCCACCGCACAGCCCCTCCGTCACACCTGAGCGGCCTGCCAGCGCCAGGACTACACCCACCATCGTGAGGGAGGCAGAGCCGGACAGGAGGGTGTCTCTGCCCATAGTGCCAGAGGCACTGAGTGCCAGGCTGCCACTGAAGCCCCACTCGGTCATGCCTGCCGAGCCCCAGGAGCCGAGCGCTGAAGCCCTGCAGCATTTCATTGCAACTGTCAGAGAGGACAATCTGGGGCAGGaggacactgcggccccccaggctGACGGGACACAGatgcctctctcctcctctaCGGACCCGGCTTTGCCCAGATACCTGTCGTACCTGCGGTACCTGGAAGCCCTGCTCAATGGTGAAGAGGACAGGCGCAGCTCTGATCCTCGTGACGTAATCTTGGATGTCCTGAGCTGCCTGCTGTGGCATCTTTGTCCCTTGCAGTGTGTGCGAGACAAAGAGGAGCTCCGCAAGCGGGCAGAGCTGGAGAACCAGCTCCTGGAACGGGTGCTGAAGTTCGTCAGCCTGCCGGACAGGACAACGACCGACCTGTTGAGGGAGGAGCCGGAGTCACGCTCTCTCACTGACCCCGTGAACGACATCTTGTCCTCTGTGCTCCTGGAGCTGCAGGAGACTCCGCCCGTGGACAACTACATGGGTACCCTGGACCAGAGCCCCGAACTGCAGCGGATGGTGGTCAGTGTGGTGGCCAGGAACCTGCCATGGGGGGGCCCTGTAGCCAGGGAGTGCGTCTCTGCCTGGGGACCGGGAGAAGCTGAGCGGCAGCCACCCACTGCGGACCTCCCACCACAGCCCGGAGACGCAGGCCAGGCCAGGGGGGAGGTCAAACTGTCCTTGTGGAAGAGATTCCGCAGGTTCTGCTCGCAGTTTTCACCACGTCTCTCCCAGCTGTGCGTGGTGAGGGTGACGCCCATGTGAACCCCCAGCCACCGACTGTGCTCCCGTCCAGAAACTAGAAATGACATTCACACGAGAGGCAGTGTGGAGGCGCTGCCGATCCAGCTTGTGAGGATCCATCGGAGGGGAGCAGCCAAGGACGGATAGCCTGCCTGGCTGGCAGGAACACAACCAGTGAGGAGCTGGCGAGCGAGAACCCAGCCATCATTACTCGGGGAGGTATTGCCGgatgagaggagagggagaagacaACAGTTTTGGGGAATCTTTCAATGAAGAACCGTTTCAAACAATGAACAATGTCTGTAGTCTGATTTCTTTTCCATTCGTTAaaaatgcaagtctcctgtatCCCTTGTTCCTCTCTCTGCATTCCCTTCTTCCAAACCTGATGCAACCAGCTTGGATCGTGGCCGTGGGTTGGGGATTGGCCATGGGGAACGTGGGGATTGGCTCAGAGTCCAGCGAAATCAAGCACACATGCaagcaataatacaataattgatCAGTCAAGTGAAACCCAACCTGTACAGTGCAAAGCAAGACCGGATGTGAAAGGTAATGCATAGATTACCAACAcgaataatgaattaaaataaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54156 lncRNA downstream 529136 27158301 ~ 27158729 (-) True G43435
TU54146 lncRNA downstream 560877 27126780 ~ 27126988 (-) True G43425
TU54137 lncRNA downstream 628623 27055552 ~ 27059242 (-) True G43417
TU54132 lncRNA downstream 638023 27049568 ~ 27049842 (-) True G43412
TU54130 lncRNA downstream 641302 27046361 ~ 27046563 (-) True G43410
TU54249 lncRNA upstream 6667 27714039 ~ 27717043 (-) True G43518
TU54335 lncRNA upstream 258640 27966012 ~ 27966233 (-) True G43590
TU54337 lncRNA upstream 353472 28060844 ~ 28061169 (-) True G43592
TU54338 lncRNA upstream 354877 28062249 ~ 28062453 (-) True G43593
TU54342 lncRNA upstream 362766 28070138 ~ 28072787 (-) False G43594
AMCG00013301 mRNA downstream 7365 27672378 ~ 27680500 (-) True AMCG00013301
AMCG00013302 mRNA downstream 36312 27618773 ~ 27651553 (-) True AMCG00013302
AMCG00013303 mRNA downstream 97154 27590091 ~ 27590711 (-) True AMCG00013303
AMCG00013300 mRNA downstream 106689 27572915 ~ 27581176 (-) True AMCG00013300
AMCG00013297 mRNA downstream 179797 27498675 ~ 27508068 (-) True AMCG00013297
AMCG00013309 mRNA upstream 36666 27744038 ~ 27745915 (-) True AMCG00013309
AMCG00013305 mRNA upstream 42260 27749632 ~ 27767228 (-) True AMCG00013305
AMCG00013306 mRNA upstream 66891 27774263 ~ 27788468 (-) True AMCG00013306
AMCG00013314 mRNA upstream 184966 27892338 ~ 27900889 (-) True AMCG00013314
AMCG00013313 mRNA upstream 210550 27917922 ~ 27927327 (-) True AMCG00013313
TU54196 other downstream 118714 27568764 ~ 27569151 (-) True G43473
TU54172 other downstream 394792 27273229 ~ 27293073 (-) True AMCG00013295
TU53964 other downstream 1130541 26556354 ~ 26557324 (-) True AMCG00013264
TU53711 other downstream 2170902 25516080 ~ 25516963 (-) True G43070
TU53641 other downstream 2521107 25163983 ~ 25166758 (-) False AMCG00013223
TU54344 other upstream 360841 28068213 ~ 28072787 (-) True G43594
TU54456 other upstream 759940 28467312 ~ 28467906 (-) True G43684
TU54700 other upstream 1546024 29253396 ~ 29254316 (-) True G43869
TU54894 other upstream 2299392 30006764 ~ 30010700 (-) False G44034
TU54953 other upstream 2373664 30081036 ~ 30083345 (-) False AMCG00013386

Expression Profile