RNA id: AMCG00013305


Basic Information

Item Value
RNA id AMCG00013305
length 4272
RNA type mRNA
GC content 0.47
exon number 21
gene id AMCG00013305
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 27749632 ~ 27767228 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTTGTTTGCTGTGGAATAACCGGTCCTCAGACGTTGCGCTGTCCAAGATTGGGGAGCCCCGAGGACCGTACTCCTTCAGCCGGAGGTGGGAAGAGCCGGCAGCATTATGTGTGTGAGCTGCAACCACCCTGCCCGTCGGACAACACTCTAGCGACCCGGAGCCACATGGAGGCGAAAGTGAGTCACGGGGTGTCGTCGGCCGTGGAGTCGGACATTTACCGCAGCGTCCAGGCCATTCTGCGCGAGCTGGACTGCCATCACCCGGCCTCCCTGTACAACAGAGGGATGCTAAGATGGACTCTACACAAGAAGATTGAGAAGAATCCCGCCAAAATAATCTCTTTGGTTAAAATAGTTGTGAAAGAACTGGAAAGGGCCGAGAGAGCAGACAACAAGCTGTACATCATACCTCTTCTGCACACGCTGATGTACGCTGTAATCCAGTCGGCTTACATCCCAGACGACCTGTTCAAGAGAGTGTACGATTTCTGCAAACGCCTGCTGACGCTCCCTCAGCCGTACTGCACAGTCGGCCTCAGCTACACCATACAGATAAAAACTGAACGCATGATGCCAGGTGTGTTATACCAGAGGATGGTCATTGCTGAACAAAGCCTTAAGAATGAACAATTTCCATACCAAGAAAAGGTGTTAGTGCTTGCAGACCCTAGCGTCTTCTCAGGCGATACAGGGGCCGCGCTGAGTCAAGACATCGAGTCCGCCAGCCCCCGACAGAGCCCTGTGGAGTACATGTGCAGTGTGATACAGCACACCATCCAGGCAGCTCTGGGGGCGAGCTGTGACGGCCCCCGGCTAGCGCATATACTGCAGGCAAAATGCCAGGATGTGGAGCAATACTTCCAGGAAGTGGTGGAGAGCGTGGAACGCTGTGCAGAGGAAGCCGGCCCCGACCGCAGTCAGTACGCTGCCAGGCTGCAGCGGCTCTACACAGACATCCTGCGCACTGCAAGCCAAGAAGACGCGGCACCGCCTCACAGTTCCCCGTGTTCCTGTCTGCTCCCGAATCCCGAGATCAGCTTCCTCCTGTGGAAGGAAGATGACATGCTGTGGAGAGAGCTGGCGAAATTTGTGCGGTCGGGGTCTTCGAGTCAGCACTTGTCTCTCAGCCAGGACTTCTTCGAGGGCGCTGACTTCTCCGTCGACCTCGGCCCGGAGATGACCCGCCTGTCCATCATGTCCAACGACAGCGGCATCGAGAGGGACCTCCCCGTGACCGAGCTGCCCCCGTTGGTGGAGGAGCCCTCAGGCGGCGAGAGCGAGCAGGAGCAGGGTCGCTTGTCCAGGAGGAACTGCATACGGATGAGGCCCTCCGTGTCCGATGGTATGGCACTCCTGCAGGACTCGCTGGAGGAGCCGGGGACTAGTGGGAAGCTGCAGAGGAAAGCTGGGAAAAATGGGATGGCCTTCCCCAGACAGCAGAGTCTCTACACGGCTCGCATCGTGGTGCTGGGTGATGACCGGGTGCTGGGCCGGCTGGCAAAGGCCTTTTATTCTCTACGGAAAAGGGAGGCCAGGCGTCTCTTCTTGACGACAAAACTGAACCTGCAGATTTACTACATACCTGTTACTGATGAAACGCAGAGCGCCTCTCCAGTGAAGGAAAATGTTTCGTCGATAAGCAGCAAGTTTTGCGATTTGGCCGCGTACCTGGGCAGGGTGGATCCGTGGTATGAGAGCAACATCAACAGCCTGGGACATATGATTCCCAAGCTGGTGAAAATGCAATCTAGCACAAGTAAATCGGCGGAGACCGACCCGTTTCTGGTTGATGTCATCTCCTACTACATCCGGATGGCGCTGCAGCCGGTTTATTTCACCATCTACTCTGTCAAGATCTCATTCTCCTCACTGACGAAGGAAACCGTGGAAGATGTTTTTGTGACACAACTGGAAGTAGATTTCCCAGAATTTAAAATGCCCACAAGTACATACAAAGATGGATCCGTGAGAAGTAAAAAGACCTTGACAGAAATCTGTGGAGCCGTCGTCTCTGTCAGCTACAGACAGGCATCTTTAAGCAACAGAGAGACTGAAAGGGGAGTATCGTTACGAACATCTGGAGTTCTTATCAATGCCATTCCCTCAAATGAAACTGAAGACCTTGACTGTCTGATTGTTACCTTCTGTGACAGTCAGAAATCCAAGACTGGGATGGAGCCCAAAATCAGGACTTGTAACATTAAAATCAGGACCCTGGAGCAAAAGGCTTTCACTGTCCGACTTGATAAGGACTCCCAGAGAGTATTTAAGGATGTCTTAAGCATCGAAGTGTCGCCGTGCTTGGACCCAGGCTACTCCGTCCAGAAAACCAGGAAGTCCAAGTTCAGCCTGGGGGATGAGAGAGAGGTGGGACTGACCCGGTACATGCACAAGGGGCTGCCTCTGCCAATCAACACATTCGCTGGGATCATCCAGTGACACaggcagccaatcacagcgcgGAATACTTCGGCAGCGGGAGATCACTGAAGAGGAAGCTGATGCAGATGTTTACAGTACCTAAATAAGCATCTGCTGACTCATGCAGTGCATATAGTTAGCAACTACCACGTGCTTAATGGTATTAAAGTCTGCCTTCACTGTAGGCAGCTAACAGATCTACCTTTATAGAAGAAATCCAACACTGGAAAATTGCAGCTGGATGTATAGCAAACACAGGTACCTGATCGTGTTTCAGGGGCTTGATAGAAAGATGAGAACTGTTAAACAAAACCGTTCTCAATGAATACAGCATTTAATATGCAGGAGAGCAGTACTCACTAATAGTTACAACTATAACCCAGAGATCAATTCTTacgaaaatgaaatgtatacacaCTAATGGCAGCCTGGAGCCATTTAGTCTGGGTTCAAACTTTGTTGCTGAAACAGGTGATTGCTTGACAACTGCTATTTTGTCATCTGTGACATCTCTTAGGAGcacatttacataatataagAAATCTTAAGTGTAAAGCACTTTACTTGTAAAACAAGGATCTGTGGTACGATTAGTTACAAAACGATAATCATAAGGAACAGGTGCCTGTGAGGCTGAGAAGGTTCTCTTCAGTCCTGAAACCGGGATCAGGATCGGCACGTGTCCAGCACGGTGAAATGAAGGTCGACACCAAACAACACGTCAGCCCTGCTTGGGCAGAGTATGCAGTCATCAGGACTCAACACTGCAGACCGGACTGAAATCATACAAAGAAGATCACGGCTTGTAAGAGTTTCGATTAGCTGCTAATGTTTAAAGAGGAACAAATCCCCAATTATTGTGTGTACTTTTCATTCGCATTGACTTTATACACTGACAAAAAAGTGCAATATGCAGGACAGTGATGGACGAGATCTCGGAGATGGGAATCTTGTCTTACTGCAGTTTTGGGGATGTCTATAAGATTGTGAAAGACAATAAGTACTCACACTGAGTTACAGTCAGgtttataataaatcaaaaaggCACTGAATTATAGTAAATCATGTAAAACCTTTTCCTGTTCATTGAGACTAAATGGGTACAAAATAAAAGGTGTTTGCAAGAATTACGTACACACACTTGCTTTTGAGCCCTTTCTCAGTGAGGTGTAATTCACACATAGCATGTGTGTCTTTGATTAATCATTTACAGTAGCTTTCCTGTAACGTGAGTTACAAAGGGTGCTAAAACGGGCTGCtaatttacagaaacaaaaacaagctgttaggtgatttattttcatgcacAATCGGTGATGTGTTGGGCAGTTTGATTATAGATatgaatttttattttcctcatggaGTTAACTATTACATAATCTGgattcatgcattcattttaatagttacatatctgtgtatttttcaattttttaactGGAAACTGGTATCCTGGTGGATAACTTGCATATATCTTGGTGTGGACTATTTTCATGTGAAGTTCACTAGAGGCCCTTTGGTCAAAAGTGTCTTTTAAATGACTAATTTCAAGGAGAGAAGTCATGTGCTCATCTTGTAGGCCCCAGAATTTATTCTTGCATATCTATATAATCTGAAAGCAAACACTGCACTTCCTGTCTGACCAGGCATTAAACGCCTCAGTTCAAGATTTTGTATGATCATTAATGAGCATTTGCACAATATTTTGTACTAGACTTGCGTTATGAACTTGTCATCTCCTGTACattaatgtatattgtatataatgtaatttattagtAGTAAATATGTTAATTACTATAATGTTTGTACATACTGTAtgaataaaattgaaatgaGCTGGGA

Function

GO: NA

KEGG:

id description
K21290 PIK3R5_6; phosphoinositide-3-kinase regulatory subunit 5/6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54249 lncRNA downstream 32589 27714039 ~ 27717043 (-) True G43518
TU54156 lncRNA downstream 590903 27158301 ~ 27158729 (-) True G43435
TU54146 lncRNA downstream 622644 27126780 ~ 27126988 (-) True G43425
TU54137 lncRNA downstream 690390 27055552 ~ 27059242 (-) True G43417
TU54132 lncRNA downstream 699790 27049568 ~ 27049842 (-) True G43412
TU54335 lncRNA upstream 198784 27966012 ~ 27966233 (-) True G43590
TU54337 lncRNA upstream 293616 28060844 ~ 28061169 (-) True G43592
TU54338 lncRNA upstream 295021 28062249 ~ 28062453 (-) True G43593
TU54342 lncRNA upstream 302910 28070138 ~ 28072787 (-) False G43594
TU54394 lncRNA upstream 462182 28229410 ~ 28234706 (-) True G43626
AMCG00013309 mRNA downstream 3717 27744038 ~ 27745915 (-) True AMCG00013309
AMCG00013304 mRNA downstream 42260 27687865 ~ 27707372 (-) True AMCG00013304
AMCG00013301 mRNA downstream 69132 27672378 ~ 27680500 (-) True AMCG00013301
AMCG00013302 mRNA downstream 98079 27618773 ~ 27651553 (-) True AMCG00013302
AMCG00013303 mRNA downstream 158921 27590091 ~ 27590711 (-) True AMCG00013303
AMCG00013306 mRNA upstream 7035 27774263 ~ 27788468 (-) True AMCG00013306
AMCG00013314 mRNA upstream 125110 27892338 ~ 27900889 (-) True AMCG00013314
AMCG00013313 mRNA upstream 150694 27917922 ~ 27927327 (-) True AMCG00013313
AMCG00013318 mRNA upstream 307313 28074541 ~ 28078702 (-) True AMCG00013318
AMCG00013319 mRNA upstream 361440 28128668 ~ 28130132 (-) True AMCG00013319
TU54196 other downstream 180481 27568764 ~ 27569151 (-) True G43473
TU54172 other downstream 456559 27273229 ~ 27293073 (-) True AMCG00013295
TU53964 other downstream 1192308 26556354 ~ 26557324 (-) True AMCG00013264
TU53711 other downstream 2232669 25516080 ~ 25516963 (-) True G43070
TU53641 other downstream 2582874 25163983 ~ 25166758 (-) False AMCG00013223
TU54344 other upstream 300985 28068213 ~ 28072787 (-) True G43594
TU54456 other upstream 700084 28467312 ~ 28467906 (-) True G43684
TU54700 other upstream 1486168 29253396 ~ 29254316 (-) True G43869
TU54894 other upstream 2239536 30006764 ~ 30010700 (-) False G44034
TU54953 other upstream 2313808 30081036 ~ 30083345 (-) False AMCG00013386

Expression Profile