RNA id: AMCG00013306


Basic Information

Item Value
RNA id AMCG00013306
length 5166
RNA type mRNA
GC content 0.46
exon number 17
gene id AMCG00013306
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 27774263 ~ 27788468 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgcagcatACCTCGTGCACGGAGGACCGTATCCTTCACACTCTGGAGAGATGTCTTCATGGACTGAGCTTCACAGTCTCGACGACGGACACCTGGAACGAGTTGGTGAACCGAGACCCTGAGAACTTCCTCATCCTTCTGCAGCAGATCCTGAAGAAAACTCGAGAGGTCCAGGAAAAATGCCAGTACGTGCTGGTGGCCCCGCTGGCGCTGATGTTTTTCTCCACTGTCCTTCGGaCACCATACTTCCCTCCAAACTGTGAGCTGCTGAGAGAGGCCTGCGAGGTGTACCACCGTTTCCTGACGTGGCCTGAGCCCTACTGTAACGTGTGCAGAGACCTCCTCACCGTCATCCACCAGGAGCTGAGGGCCCCAGGAATTTCCTATCACAGGCTTGTAAGAGAAGAGCAAGGATTGGCCACTGAGAACCAGCAGTCCAGGACCATAACTGTGCTGTTAATGAACCCCGCTGATGTCCCCCAGGAGTTCCTGTCCGTGTCGGAGAAGCTCAGCGGCGTCCGTCACTCCCGGAAGGACATGTACATCACACTGATCAAACATGCATACCAGTCCGTGTTCGGCCCCAAGTACAGCCTGGACTGCATGCAGAAGGCCCTGGAGACGAAAGATCTAGAGGCGCTTGGGCACATCTTCTCGTCTGTCACTGAAATCCTGGAGATGGCAGCTTCTATGGAAGACGAAGACAAAGCTGGAGCTCACGTAGTGGAGGAATTGGAAAGGATGAGGGAGGAAATCGGAGTGAATGTACAAAATGGCAAGAGATTCGAGGGAGTTCTGCAGATTCTGCCCCTGCCCATCGCCAAGTGCTACACGTACCACTGGACTAAGGATAATTTTGACATTTTGAACGAGATCCTCCAGAGAGAGTCGGCCCTGGTGGAAGCCCAGAGTTGCCCGGACGAGGGTGACATGGATGATGAGGAACAGGAGTATGCGGAGGatgagggggaggaggagatggaggtgAACGGCTGTGTGGATCACCGGGCCTCCACCTTCTCCACCGTGTCCACCTTCTCTACCACTTCCAAAGACTCGATGTTCTCCACCTTCTCCATAGCATCTGACATCTCCAAGCGCTCCTTCCTATCTGTGACCTCGGGGGTGGACAGTGACTTCTGTGATGACAACGAGGATGACGGCAAGCCAGAGAAGAGCACCAAAGCCAGGCTGAGCCAGCGCTTTTCTAAGTTCTTGAACTTCAAGTCCAAGAGTAGCACCTCGCTCAGCAGGGCCAAAAGCCTGGGGAACTCAGAATCCAGAGACTACCTACCGGTCAGGTCCAAGAGGTCACTCTCTTTGCCACAGCAGGTCCACCTGAGGAGTCCTGAGAAGGTTCTCATCAAACACATGTGCTTCAGAAGGAGACCAATCCTGAGCTGTGACGAGGACAGCAAGAACACCACGCtcagggttgttgtttttggcgCTGATCGCATTACTGGCAAAGTCGCAAGAGCCTACAGCAACCTCAGAAGCTCCAGCGGGCCGACTGTAGGGTGGCCCAGTCAAGTCTCCGCCGTGACGGACAGCCCTCTGAAGAGCACTGCACTCGTGGACCCGGGCTCAGAGGACAGCACCAATGACATCTCTCGCTACATCGGGATGCTGGACCCCTGGTACGATCGCAACATGCTCAGCTTACTCAACCTGCCGATTGAGGTGCTTTGCCAGGAGCAGCTGCCCATCCTGGCCGACATGGTCCTGTACTACTGCCGACACGCGGCGCGCCCAGTGCTGATCCAGCTGTACCAGGCCGAGCTAACGCTGGCCGGGGGAGAGACGAGGACAGAGGTGTTCATCCACTCGTTGGAACTGGGCCACACCGCTGGCACCCGTGCAGTTAAGGCCTCTGGTCCCGTCAGCAAGAGGTTTGGCATCGATGGGGATCGTGAAGCTGTGCCCTTAACACTAGAAATCGTTTACAACAAGGTTACAGTTAGTGGACGGAGTCAGTGGATTAAAGTTGACAAAGTTTGCACCTCAGTCAACCTGACGAAAGCCTGCAGGAAATCTGAAGAACTAGATTCTAAGATGGAGTGTCTTCAGATGACCATGACTGAGGTACTGAAGAGACAGAACTCCAAGTGCAAGAAAGGCTATAATCAGCAACTCAACACCACCGAGGTGAAGGTGGACAAGGTGGAGGTGACCGGTGCAAGCAGCACCACCTTTGCCGTCTGCTTGGACCAAGACGAGAAGAAGATCCTGCAGAGTGTCACCAGATGCGAGGTGTCTGTGTGCTACAAGCCCGAGAGTGGGGTCCACTGGCGAGTTCGGAAGGCACTGTCTATGCAGATGCAGCCCCTGCACCCTGAGATCTGCTCCCTCCTGTGCCTCCCCATCTCCACCTTCAGTGGCGCTCATTCCTGATGAAGTGGACGCAGACCGAGCAGCCCGCTGGAGCGAGGCCGGGCCCCGGAGACCTCCACACGACCAGGGTCTTTGAGAATCTGTAATCGGCCGTATCTGCGACACGCACACGTGTGTCAGTGTCGGTGCAGCTGATCTCTTTTCATCGTCACGAAGAGCAGCAAGGCCGACAGGGATGTCATGGTTAgatgtatgcatttgtgtagCTAATGCCTTTGTCCGAGGTGTGACAgagtttagaaacaaaaacaaaaaacatgcaattcCCCTGCGACATTAACAGGAAACatgaaaaacttaaaaaacatcatataaatgttaatgttatataAGGGACTTCTGTGCTTTCTGTGGTATTGTATTAATCTCAGAGCTGCCGTTTCACCGTGCTTCCTGCAGATTTGGCTGGCTCTAGTGGATCAAACTGCCGATGTGGTGAGCCAGTGTCAGTCCTTCTCTGTTTTAGATTCATTATAACAAGGGGAATTAAGGGTGTGACAGAATTCTTATTTTCACAAAGCTATGCAATATGGCCAAGACCAGGCCTAATTACTAGTTTGACTGACTTAATTTGACTGAAATGATTGTTTCAATATACAGATATGGTTCCGTGCAAATCAAATTCCTTGGTTGTAGTGAATGCAAACATGGGAATATTTAACTTAATATAAAATCTATGCATGTATAGTTTATTGTTGTGTTCTTGGTTTCTACTAATTTAATGCAAACGATGGACAGGATTTTCTAAGCCTTTTGCTTTGCAGTCATCAAAACACTtagatttaaagaaaatgggcaggccttcatccagcaatgaATTGACAGAGGCTGCTGATgattacatatgtatataaagctCTTTCTATATTGCACCTAAAGAGAAGGAAATTACAAGTTATTAATtcgtatttatattttgtgaggtgtacttatttatttgtgattgcTGTCTCAATTAAAATAGAGGAGTTTTATTCATAGCAAAAGCTTATAAAATCTGGTCCATCATGTCGCAGGGCTCgaccaaatcaaagctttgacgCACACATGAATCATGAATATTACAGAGCTGTACCCTGTTGCGTTTTGATTCATAAATAGCAGAGACTGACATCcaagaataaattaaaccaccacaggatacagatttgtactttgcgattcgCGGGCACGGATTTGATTTGGTCCGGCCCCCAGGTTTGTAAATACTGCtctgtgtaactgataaaacgTGCAATAACTTTAAATGTTTGACAGCTGATATAATCCAAGTCCCATGAAGACCAGAtgcacttttctgttttgtcaAGGTACCGTACAGCTCAGGATttctcttgtttgtgtttttttctgcaatgGTGCTGAACAGCTATAACCTTAAAAAGCATAAAGAACCTTAAAAGTCTTTAaagcctttaaaatatatacattgtgtttacatttttgtattgcacaGTCAAATCTATCTTAACACACGGCgtgaaatttaaaaatgcatgctaTGGCCTGGACTCTTTGGTTATCTGTGGCTCTGGGAGAGAAGCACAATGGCACGTTGCCGGGCACATTTTCATACATCGATGGGTTACTTCCTCAGAGGACAGTACGTGTTTTAAAAGCGTTGCTGATTCAGTGCTTTTAAAGTGATGTGATGAAAAAGGAATCGATGTTGTGAAACTGCACGGTCATTAACATTAAACTAACAACAGTTAAATGATGTGTGGTAGGCAAATATCGGCTGTGTAAGTGTGCTTTACACTCTATACGACTATTCAATAGTCGATGATTCCACAGTTACAGAGCTAGCAGCAAAAGGTGCTCAAGGTCGCCACAGCAATGGCTCTCACTGCCGCTAACAATTTTTAACACTTCACTGTTGTGAGAACTAAAATTAATAAtcaccatttttgttttacaaattgacacacatacatcaaaaacacacatacttCGATAGGAACTGATTTGTAATATCTTTGATTGTAGGTCGATAGGTTCTACCTTTGTGCTCTGATGAGAGTCTGACTTTTGCTGGCAGTGAATTGCTCCCTGTCTgtaacacacactgtatatattgtacatagTGAGCAAAGGCTTAAACCTGAGAGAATCCATGGAAGCACTTTTGATTGTAAACCTCCTGTATGAAAGTGTGGATTTTTCCAGGGGCAATTTGTTAATGGGATAGTTTTACCTTCTTACAGAGAAATATTGTGCAGACTTTTACTGTGATTCTACAGTTAAAACAATCTGATCCTGAGAGAGATCGATATGATGCGGTACGTTTCACGTGAAGTGAAGaacgtaaaataaataaactttgtgGTTATGCACTCTAATGCGGTACATAAAATACACACCAAATGAGCCAAATTCACACCAAAGCACAGGAACTTCTCAGATTTTGTGAGAATTCCTCATGTCAtgtaggaaaaaatataattttcatctGTAATTCTAAGAGTTTGTAATAAGGTATGTGCACAAATGATTTACATTAACACATATTAACTCAAACCAGAATTAAGTATGATGTGCTCCAGACTTATCAAGGAGGTCCAAATATAATTTTTGGTCCACCTTATAATTTTTCTCTGATCTCTGGTATAGCTGTCCCTATGGGAGTCTttcatatgaaaacaaaataagttgtttacaataatttatCAATATTGGTTCATGTTGaattcttcatttttcttttccatttttttccatAACAAATTAAGCTTtacatgtttgtaaaataatgtacaaaaaatttgattgttt

Function

GO: NA

KEGG:

id description
K21290 PIK3R5_6; phosphoinositide-3-kinase regulatory subunit 5/6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54249 lncRNA downstream 57220 27714039 ~ 27717043 (-) True G43518
TU54156 lncRNA downstream 615534 27158301 ~ 27158729 (-) True G43435
TU54146 lncRNA downstream 647275 27126780 ~ 27126988 (-) True G43425
TU54137 lncRNA downstream 715021 27055552 ~ 27059242 (-) True G43417
TU54132 lncRNA downstream 724421 27049568 ~ 27049842 (-) True G43412
TU54335 lncRNA upstream 177544 27966012 ~ 27966233 (-) True G43590
TU54337 lncRNA upstream 272376 28060844 ~ 28061169 (-) True G43592
TU54338 lncRNA upstream 273781 28062249 ~ 28062453 (-) True G43593
TU54342 lncRNA upstream 281670 28070138 ~ 28072787 (-) False G43594
TU54394 lncRNA upstream 440942 28229410 ~ 28234706 (-) True G43626
AMCG00013305 mRNA downstream 7035 27749632 ~ 27767228 (-) True AMCG00013305
AMCG00013309 mRNA downstream 28348 27744038 ~ 27745915 (-) True AMCG00013309
AMCG00013304 mRNA downstream 66891 27687865 ~ 27707372 (-) True AMCG00013304
AMCG00013301 mRNA downstream 93763 27672378 ~ 27680500 (-) True AMCG00013301
AMCG00013302 mRNA downstream 122710 27618773 ~ 27651553 (-) True AMCG00013302
AMCG00013314 mRNA upstream 103870 27892338 ~ 27900889 (-) True AMCG00013314
AMCG00013313 mRNA upstream 129454 27917922 ~ 27927327 (-) True AMCG00013313
AMCG00013318 mRNA upstream 286073 28074541 ~ 28078702 (-) True AMCG00013318
AMCG00013319 mRNA upstream 340200 28128668 ~ 28130132 (-) True AMCG00013319
AMCG00013325 mRNA upstream 408489 28196957 ~ 28199793 (-) True AMCG00013325
TU54196 other downstream 205112 27568764 ~ 27569151 (-) True G43473
TU54172 other downstream 481190 27273229 ~ 27293073 (-) True AMCG00013295
TU53964 other downstream 1216939 26556354 ~ 26557324 (-) True AMCG00013264
TU53711 other downstream 2257300 25516080 ~ 25516963 (-) True G43070
TU53641 other downstream 2607505 25163983 ~ 25166758 (-) False AMCG00013223
TU54344 other upstream 279745 28068213 ~ 28072787 (-) True G43594
TU54456 other upstream 678844 28467312 ~ 28467906 (-) True G43684
TU54700 other upstream 1464928 29253396 ~ 29254316 (-) True G43869
TU54894 other upstream 2218296 30006764 ~ 30010700 (-) False G44034
TU54953 other upstream 2292568 30081036 ~ 30083345 (-) False AMCG00013386

Expression Profile