RNA id: AMCG00013307


Basic Information

Item Value
RNA id AMCG00013307
length 1062
RNA type mRNA
GC content 0.65
exon number 2
gene id AMCG00013307
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 27811693 ~ 27814163 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTCAGGATCTGGGAGGCTCTGGCCACGTTGGTGGCGGTGTCCTCCGTGCTCGGTGAGGTGCTCGGGGGGTACGGGATGAGCATGTTCGCCGCCCAGACCTCCCCCCCGGACCCGTGCTATGACGAAAACGGCCACCCGAGGAGATGCATCCCCGACTTCGTCAACTCCGCTTTCGGCAAGGAGGTGCGGGTGTCCAGCACCTGTGGGAAGCCGGCCGGCCGCTACTGTGTGGTGTCGGAGAAGGGCGACGAGAGGAGCCGGGACTGCCACACCTGCGACGCCGGGGACCCCAAGAAGTCTCACCCGCCGGCGTATTTAACGGACCTCAATAACCCCCACAACCTCACCTGTTGGCAGTCGGAAAACTACATCCAGTACCCGCAAAATGTCACCCTGACCCTGAGCCTGGGCAAGAAGTTCGAGGTGACCTACGTGAGCCTGCAGTTCTGCTCGCCGCGCCCCGAGTCCATGGCCATCTACAAGTCCATGGACTACGGCAAGAGCTGGGTGCCCTTCCAGTTCTACTCCACCCAGTGCCGGAAGATGTACAACAAGCCCAGCAAGGCCACCATCACCAAGCAGAACGAGCAGGAGGCGATCTGCACCGACTCGCACACCGACATGCACCCCCTCTCCGGGGGCCTGATCGCCTTCAGCACCCTGGACGGCCGCCCCTCGGCGCACGACTTCGACAACTCGCCCGTGCTGCAGGACTGGGTGACGGCCACCGACGTGCGGGTGACCTTCAGCCGCCTGCACACCTTCGGGGACGAGAACGAGGACGACTCGGAGCTGGCCCGGGACTCGTACTTCTACGCCGTGTCGGACCTGCAGGTCGGCGGCCGCTGCAAGTGCAATGGACACGCGTCCCGCTGCGTCAAGGACCGCGACGGCAACCTGGTGTGCGAGTGCAAGCACAACGCGGCCGGGCCCGAGTGCGACCGCTGCAAGCCCTTCCACTACGACCGGCCGTGGCAGCGCGCCACTGCCCGGGAGGCCAACGAGTGTGTGGGGGATGCCCTGCTCTGCCCTGCTGTGaagcgctgctgctgctggtga

Function

GO:

id name namespace
GO:0016358 dendrite development biological_process
GO:0016525 negative regulation of angiogenesis biological_process
GO:0030516 regulation of axon extension biological_process
GO:0001569 branching involved in blood vessel morphogenesis biological_process
GO:0071678 olfactory bulb axon guidance biological_process
GO:0021960 anterior commissure morphogenesis biological_process
GO:0033564 anterior/posterior axon guidance biological_process
GO:0048665 neuron fate specification biological_process
GO:0005576 extracellular region cellular_component

KEGG:

id description
K06843 NTN1; netrin 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54159 lncRNA upstream 393906 27270028 ~ 27417787 (+) True G43438
TU54122 lncRNA upstream 801042 27010372 ~ 27010651 (+) True G43402
TU54027 lncRNA upstream 881440 26872821 ~ 26930253 (+) True G43326
TU54325 lncRNA downstream 254483 28068646 ~ 28072799 (+) True AMCG00013317
TU54444 lncRNA downstream 575526 28389689 ~ 28389960 (+) True G43673
TU54481 lncRNA downstream 866647 28680810 ~ 28682174 (+) True AMCG00013336
TU54482 lncRNA downstream 866647 28680810 ~ 28682174 (+) False AMCG00013336
TU54489 lncRNA downstream 923960 28738123 ~ 28738753 (+) True G43712
AMCG00013299 mRNA upstream 202225 27592775 ~ 27609468 (+) True AMCG00013299
AMCG00013296 mRNA upstream 242398 27548805 ~ 27569295 (+) True AMCG00013296
AMCG00013298 mRNA upstream 425066 27386091 ~ 27386627 (+) False AMCG00013298
AMCG00013288 mRNA upstream 671094 27130164 ~ 27140599 (+) True AMCG00013288
AMCG00013287 mRNA upstream 694256 27111850 ~ 27117437 (+) True AMCG00013287
AMCG00013308 mRNA downstream 60330 27874493 ~ 27875484 (+) True AMCG00013308
AMCG00013310 mRNA downstream 114545 27928708 ~ 27935009 (+) True AMCG00013310
AMCG00013311 mRNA downstream 122250 27936413 ~ 27946835 (+) True AMCG00013311
AMCG00013312 mRNA downstream 138220 27952383 ~ 27953343 (+) True AMCG00013312
AMCG00013317 mRNA downstream 193351 28007514 ~ 28068950 (+) False AMCG00013317
TU54201 other upstream 220875 27589139 ~ 27590818 (+) True G43476
TU54169 other upstream 396407 27385665 ~ 27415286 (+) True AMCG00013298
TU54155 other upstream 652972 27158302 ~ 27158721 (+) True G43434
TU54005 other upstream 1000078 26808164 ~ 26811615 (+) True G43309
TU53939 other upstream 1271644 26524826 ~ 26540049 (+) True G43263
TU54319 other downstream 119911 27934074 ~ 27935938 (+) False AMCG00013310
TU54454 other downstream 670110 28484273 ~ 28488783 (+) True G43682
TU54615 other downstream 1290126 29104289 ~ 29104577 (+) True G43802
TU54772 other downstream 1826460 29640623 ~ 29658948 (+) False AMCG00013364
TU54850 other downstream 2106904 29921067 ~ 29928697 (+) False AMCG00013375

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00051383 True 1809 mRNA 0.57 6 NC_007114.7 25711635 ~ 25813426 (-)
grasscarp (Ctenopharyngodon idella) CI01000034_00123919_00185433.mRNA True 1803 mRNA 0.56 6 CI01000034 123919 ~ 185433 (+)