RNA id: AMCG00013309


Basic Information

Item Value
RNA id AMCG00013309
length 1878
RNA type mRNA
GC content 0.59
exon number 1
gene id AMCG00013309
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 27744038 ~ 27745915 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACCAGAAGCAAGCAGTGGGATATACGGCATGCTATTGCCCTCGCCAGCGTTTTTCATTTCATCCACTCCGCCGCGAAGGCCTGCTTGATCCCCTTTCTGACACTGTACTTCAGGCAGCTCGGCCTAACGGCGTCCATGACCGGCATTGTAATGGGGACCAAGCACCTGCTCAGCCTGGTGTGGAGCCCCATTTCTGGCCTGCTGGCCAAGCACTACAATAAAAGGCGAGGGGTGATTCTGGCCTCCCTGCTGGGCTCGGTGGCAGCCAGTCTGCTTCTCCTCCTCATCCCTCCCTCGAACGATGAGGTGATGAGCCGGTATTGCAACATCAGCCTCTGGGGGGGCGCTGCAGATCCCAAAATCATAGAGGATTCAAACAGGTACGTTAATTTCGGGAACGTTACACCCACCTTGGGCACATTCACTACCCTGGGGTACCAGACCACCTCGACTTTCCCGATAAACGAGACCAGTGCGTCCGTGTCAGGGACCAACAGTGTGGTCCACACGACACGCGGGGTAACTGGTGTGGAGCTGCCTTTGCCTGCAGGTACGAGTGTCGGTGTCCTGTCAGGAGCGAACCAAACTTCAGACCAAGCCACTGACCACTTGAATGAACCGAAGCAATCGGTGACATCAGTCACTCAACAGCCAACGGCCAAGAAAGCTGACGCGCAAGAAGGTGACAGTGTGGATGAACGCAGAGTTTCAGCTGGTGGCACCTCCATCCACACTCCTTCAAAGAGAAAAGCGAGATCAGTCTTGAATGCCGAGCTGGAAAAAGATGCAAGCTCGGAGTTTCTGGGCAATCTCAATGTCATGGATGCTCAGCACCAGCTTTTCTTCCTGGTCCTCATGGTTGTGGCTCTGTGGGAGTTCCTGGCCGCGCCCCTGGAGCAGACGGCGGATGATGGTCTGTATGAGTATCTGGATTTTGTGGACGCCACCGACCGCTATGGCAAACATAGGGTCTGGGCGCTGCTGGGGGCGGCGGGCAGCGTCGGCTGCATTGGGCTCCTGGTCAGCAGCCTGAACTGCTTCATAAGTGGCCACACTCCCCGCAGCGCCGTCCACTTCTACACCCACGCTCTCCTGATCGCCGCAGCCATCCTGGTCGCCGCCTTCTTGCCGCTCTACTCCAGCAGGAAGCGGGAGCCCCTGAACCAAGTGGTCAGGGCCCTGCAGCTGGTGAGCGCCGAGGGCCGGGCCATGCTGTGCGCCACCACTGCCTTCCTGGTGGGGGCAGCCGGAGCCGGCGTGGACAACTTCCTCTTCTGGGAGATGCAGGACAAGGGGAGCAGTGAGCTGTTCATGGGGTCCTCATTGGCCATAGCGCTGCTCTCACAGTTCGCAATGTCCTTCTTCAGCAACAGAGTCTCCAAAGTCCTCGGCCAGATGGGGACCGTAGTGTTCGGGACCGTCTGTCTGGCCCTGCAGTGCCTCTACTACTCCTTCCTGTGGTCCCCGTGGGCAGTGCTGCCTGTTCAGGTGTTGAGCTCCTTCAGTGGTGGGGCGCTGTGGGTGGCCTTGCGTACCCAGTGCGACGACATCTCCACGCCGGGGATGGAGAGAGCTGTACAGAGGGTCTTCCACGGCCTCTCGCTGGGCCTGGGGGCCGGCCTGGGCAGCTTCGCCGGCGGCTTCGTCACCCAGAGGTTCGGTGTGGAGTTGCTCTTCAGGGCAACCGCAGCTGCTCTGCTCTTGTGGTCCGTGGGCTTCCTGATCGCACAGTCCAGGATGCCCCGGCAGAAGAGGCTGAACTATTCGAGGCTCTTAGTGGCCGACACAAGCGAAGTCAGCGACTCGGAGTCGGAACAGGAGAGAGACTGGCTTGTGAGCGCAATGAAGGATGATAAATGCAATAACATCcggtaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54249 lncRNA downstream 26995 27714039 ~ 27717043 (-) True G43518
TU54156 lncRNA downstream 585309 27158301 ~ 27158729 (-) True G43435
TU54146 lncRNA downstream 617050 27126780 ~ 27126988 (-) True G43425
TU54137 lncRNA downstream 684796 27055552 ~ 27059242 (-) True G43417
TU54132 lncRNA downstream 694196 27049568 ~ 27049842 (-) True G43412
TU54335 lncRNA upstream 220097 27966012 ~ 27966233 (-) True G43590
TU54337 lncRNA upstream 314929 28060844 ~ 28061169 (-) True G43592
TU54338 lncRNA upstream 316334 28062249 ~ 28062453 (-) True G43593
TU54342 lncRNA upstream 324223 28070138 ~ 28072787 (-) False G43594
TU54394 lncRNA upstream 483495 28229410 ~ 28234706 (-) True G43626
AMCG00013304 mRNA downstream 36666 27687865 ~ 27707372 (-) True AMCG00013304
AMCG00013301 mRNA downstream 63538 27672378 ~ 27680500 (-) True AMCG00013301
AMCG00013302 mRNA downstream 92485 27618773 ~ 27651553 (-) True AMCG00013302
AMCG00013303 mRNA downstream 153327 27590091 ~ 27590711 (-) True AMCG00013303
AMCG00013300 mRNA downstream 162862 27572915 ~ 27581176 (-) True AMCG00013300
AMCG00013305 mRNA upstream 3717 27749632 ~ 27767228 (-) True AMCG00013305
AMCG00013306 mRNA upstream 28348 27774263 ~ 27788468 (-) True AMCG00013306
AMCG00013314 mRNA upstream 146423 27892338 ~ 27900889 (-) True AMCG00013314
AMCG00013313 mRNA upstream 172007 27917922 ~ 27927327 (-) True AMCG00013313
AMCG00013318 mRNA upstream 328626 28074541 ~ 28078702 (-) True AMCG00013318
TU54196 other downstream 174887 27568764 ~ 27569151 (-) True G43473
TU54172 other downstream 450965 27273229 ~ 27293073 (-) True AMCG00013295
TU53964 other downstream 1186714 26556354 ~ 26557324 (-) True AMCG00013264
TU53711 other downstream 2227075 25516080 ~ 25516963 (-) True G43070
TU53641 other downstream 2577280 25163983 ~ 25166758 (-) False AMCG00013223
TU54344 other upstream 322298 28068213 ~ 28072787 (-) True G43594
TU54456 other upstream 721397 28467312 ~ 28467906 (-) True G43684
TU54700 other upstream 1507481 29253396 ~ 29254316 (-) True G43869
TU54894 other upstream 2260849 30006764 ~ 30010700 (-) False G44034
TU54953 other upstream 2335121 30081036 ~ 30083345 (-) False AMCG00013386

Expression Profile