RNA id: TU54319


Basic Information

Item Value
RNA id TU54319
length 1231
RNA type TUCP
GC content 0.35
exon number 2
gene id AMCG00013310
representative False

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 27928708 ~ 27935938 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCCAGTGCTCACTGAGATGCCCCCCCCAAGTCTAACTCCCAAAGTTCCAGAGCAGCACCCCCTGTCAGCCTCCATGTTTATGGCTGGGGGCAAGGAGAGGATTATCATCGGCGGAGGTGGGGGGCAGGCTCTGTGCATCGAGGCAGACCTGCTCAACGGGCGGACAGAACGATGCGACACCTTCGAGAACTCTCCCCTCTGCAGAGAACACTTCAAAATCCAGTGCCTGGAAGTCTGGGGGATCCAAAGCTCGACCAAATTCACATCGGCTTCCAGCAAACAGTCTGTTGATTATATATAGACCAAGAATGAGGTTTTGCTTCTGCTTCACATgaattgttaaatatttgagTCATGCTAATACTGTATTTCCCTCTTATTTAATACTCTTAgcatataaaatatgttttacatttttcagataaAGAGATTCTTTATCACCCCCCAGGTGTAAAGTTGTATGTCAAAGCTTTTATTTCTGCaaggttttgtgtgttttgtggaaTATGTGCAACAACCAAAGTAAAAATATGTGATATCAAGTTACAATataactttataggaaaattattttaagaatgacatagtatatattattgaaattgttatactgcataaataaatacaaagggCATAATTTGTTCATTAGGTTCCTTTACAACAACTTTTAATGTCTGTAAATCTCGTCCAGGAATTATTATTGAACTACATGTGCATTGTTTCCTTCAGTAATGCCAGCTTCTAGCACtgtggttttattaatatttgattttatataaaaataaaaaacacccacaAAGGTGGTTTGGTTTTTCAGACAAAAGTTAAGTCACTAATAATTGTTCTCTCACAGATACAATGGATACAATGGTTTAAAAACCATTCATTATTCtgcatgtaatatataattataattataattagtagCAGTAGAAGTAGATTATTGTTcgtattattttatgattttaatggtTTGGGTACAGcgttttttaaatctgcttcTATTGACATGTGATGTTGAAATGTGATGTATATTGTAAGATATAATTATATGTGAATTTGAAGAAATGTTGTTCAGTGAACCTGGAGTAAAGgcaatatattgtattgatgtTTAGATGTATCGTGAGAAGTGCTCCCACAAAAAGTGCTTGAATTAaagtttttcctcttttctgttgtttcactCGGCTaatccaaaatgaaaataacctGGTATTTTGTAGTACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54159 lncRNA upstream 516287 27270028 ~ 27417787 (+) True G43438
TU54122 lncRNA upstream 923423 27010372 ~ 27010651 (+) True G43402
TU54027 lncRNA upstream 1003821 26872821 ~ 26930253 (+) True G43326
TU54325 lncRNA downstream 132708 28068646 ~ 28072799 (+) True AMCG00013317
TU54444 lncRNA downstream 453751 28389689 ~ 28389960 (+) True G43673
TU54481 lncRNA downstream 744872 28680810 ~ 28682174 (+) True AMCG00013336
TU54482 lncRNA downstream 744872 28680810 ~ 28682174 (+) False AMCG00013336
TU54489 lncRNA downstream 802185 28738123 ~ 28738753 (+) True G43712
AMCG00013308 mRNA upstream 58590 27874493 ~ 27875484 (+) True AMCG00013308
AMCG00013307 mRNA upstream 119911 27811693 ~ 27814163 (+) True AMCG00013307
AMCG00013299 mRNA upstream 324606 27592775 ~ 27609468 (+) True AMCG00013299
AMCG00013296 mRNA upstream 364779 27548805 ~ 27569295 (+) True AMCG00013296
AMCG00013298 mRNA upstream 547447 27386091 ~ 27386627 (+) False AMCG00013298
AMCG00013311 mRNA downstream 475 27936413 ~ 27946835 (+) True AMCG00013311
AMCG00013312 mRNA downstream 16445 27952383 ~ 27953343 (+) True AMCG00013312
AMCG00013317 mRNA downstream 71576 28007514 ~ 28068950 (+) False AMCG00013317
AMCG00013316 mRNA downstream 225392 28161330 ~ 28166776 (+) True AMCG00013316
AMCG00013315 mRNA downstream 236813 28172751 ~ 28179801 (+) True AMCG00013315
TU54201 other upstream 343256 27589139 ~ 27590818 (+) True G43476
TU54169 other upstream 518788 27385665 ~ 27415286 (+) True AMCG00013298
TU54155 other upstream 775353 27158302 ~ 27158721 (+) True G43434
TU54005 other upstream 1122459 26808164 ~ 26811615 (+) True G43309
TU53939 other upstream 1394025 26524826 ~ 26540049 (+) True G43263
TU54454 other downstream 548335 28484273 ~ 28488783 (+) True G43682
TU54615 other downstream 1168351 29104289 ~ 29104577 (+) True G43802
TU54772 other downstream 1704685 29640623 ~ 29658948 (+) False AMCG00013364
TU54850 other downstream 1985129 29921067 ~ 29928697 (+) False AMCG00013375
TU55045 other downstream 2282972 30218910 ~ 30222209 (+) False AMCG00013396

Expression Profile