RNA id: AMCG00013311


Basic Information

Item Value
RNA id AMCG00013311
length 1554
RNA type mRNA
GC content 0.53
exon number 12
gene id AMCG00013311
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 27936413 ~ 27946835 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgtctgcagACACGCAGGAGGTGCCTCAGCTGGAGCTGGAATCAGTCATTGGATTTAACGGACAGGTGTTTTCTGGCCTGATTGTCCACCCTGACCGGGAGCACATTATTTACCCCCTGGGATGCACAGTCATCATCAAGAGcctcaacaacaacaagcagGAATTTCTGCACGGACACACCAACAACGTGTCCTGTGTCACCGTGTCCCGGAGTGGGAAATATGCAGATGTGATCATCTGGGATTACGACAGGAAGGACATGTATGCCAGATTGCAGCTTCACAAGGCGAAAGTGGAAGCTCTAGCTTTTTCCCCAAATGACCTATATTTGGTGTCCCTTGGAGGCCAGGATGATGGCAGGCTGTGGCTTCTGGTTTGGGCCTCTCACTCCAGTGCCCCTGCCAGCTCTTTGATCCACTTCTCTCAAGGTTTTGACCTGGTTTTCATAGCATGGCCTTATGAGCATGCGATTCCAGAGGATGATAGTTTTTTCTACTGTGGAACAACGAGTGGAGATATCCTAAAAGTTAATTTCAGGACCAAACTTCTGAACTGCTGTGGCCCCGTGAAGGAGAAATTCAGCAAGGGAGTCAACGCTGTTCAGGtgctgaaaacaggagacatgcTGGTGGGCTCGGGGGACGGCAGCTTCTCTCTGTGCCGAGGAGCAAACTTCAAACCTGTCAAGAAAGTGCAGCTGGAAGGGGGCGTGACCTCGATCGCCTTGCGAGGGCAGGGGCACCAGTTCTTCGCGGGCACCGAATCTTCACAGATCTACCGCTTTAACTACACAGACTTTAAAGAGGAACTGGTCAGCACGGGTCACAACCACACCGTGAACGACATCGCCTTCCCCCTTGGCACATCTGACCTGTTTGCCACGTGCTCCAAGAACGACATCCGCGTGTGGCACACCGACACCTCCAGGGAGCTGCTCCGGATCTCGGTGCCCAACATGACGTGCCACGCCGTGGAGTTCATGAGCGACGGCAGGAGCATTATCAGCGccTGGAACGATGGGAAGATCCGAGTCTTTACCCCGGAAAGCGGTAAATTGATGTTGGTCATCAACAACGCCCACAGCATGGGTGTGACAGCCATCAGCGCCACCAGCGACTGTAAGAAGATCGTgagtggagggggagaggggcagGTGCGAGTTTGGGAGATCGGTAAAGACAGTCATCGCCTGGTTGAGGCCATGAAGGAGCACAAAGCCACAATCTCCTGTATAAAGATAAAGAGGAACAACCAGGAGTGCGTCACTGCCAGCTCTGATGGGACCTGCATCATCTGGGACCTGGTCCGGTTTGTGAGGAATCAGATGGTGCTGGCCAACACGCTGTTCAGATGCGTCTGCTACCATCCGGAAGAGTTTCAGATCATCACCAGCGGCACCGACAGGAAGATCGAATACTGGGAAGTGTTTGACGGCTCTGCTCTCAGAGAACTGGAGGGCTCTCTGTCTGGGTCCATTAACGGCTTGGAAATCTCCCAGGATGGCCATCACTTTATCACAGGTAGGGGTCGCAGGGCAGCAATACATCAATAA

Function

GO: NA

KEGG:

id description
K24728 CFAP52, WDR16; cilia- and flagella-associated protein 52

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54159 lncRNA upstream 518626 27270028 ~ 27417787 (+) True G43438
TU54122 lncRNA upstream 925762 27010372 ~ 27010651 (+) True G43402
TU54027 lncRNA upstream 1006160 26872821 ~ 26930253 (+) True G43326
TU54325 lncRNA downstream 121811 28068646 ~ 28072799 (+) True AMCG00013317
TU54444 lncRNA downstream 442854 28389689 ~ 28389960 (+) True G43673
TU54481 lncRNA downstream 733975 28680810 ~ 28682174 (+) True AMCG00013336
TU54482 lncRNA downstream 733975 28680810 ~ 28682174 (+) False AMCG00013336
TU54489 lncRNA downstream 791288 28738123 ~ 28738753 (+) True G43712
AMCG00013310 mRNA upstream 1404 27928708 ~ 27935009 (+) True AMCG00013310
AMCG00013308 mRNA upstream 60929 27874493 ~ 27875484 (+) True AMCG00013308
AMCG00013307 mRNA upstream 122250 27811693 ~ 27814163 (+) True AMCG00013307
AMCG00013299 mRNA upstream 326945 27592775 ~ 27609468 (+) True AMCG00013299
AMCG00013296 mRNA upstream 367118 27548805 ~ 27569295 (+) True AMCG00013296
AMCG00013312 mRNA downstream 5548 27952383 ~ 27953343 (+) True AMCG00013312
AMCG00013317 mRNA downstream 60679 28007514 ~ 28068950 (+) False AMCG00013317
AMCG00013316 mRNA downstream 214495 28161330 ~ 28166776 (+) True AMCG00013316
AMCG00013315 mRNA downstream 225916 28172751 ~ 28179801 (+) True AMCG00013315
AMCG00013321 mRNA downstream 243600 28190435 ~ 28196943 (+) True AMCG00013321
TU54319 other upstream 475 27934074 ~ 27935938 (+) False AMCG00013310
TU54201 other upstream 345595 27589139 ~ 27590818 (+) True G43476
TU54169 other upstream 521127 27385665 ~ 27415286 (+) True AMCG00013298
TU54155 other upstream 777692 27158302 ~ 27158721 (+) True G43434
TU54005 other upstream 1124798 26808164 ~ 26811615 (+) True G43309
TU54454 other downstream 537438 28484273 ~ 28488783 (+) True G43682
TU54615 other downstream 1157454 29104289 ~ 29104577 (+) True G43802
TU54772 other downstream 1693788 29640623 ~ 29658948 (+) False AMCG00013364
TU54850 other downstream 1974232 29921067 ~ 29928697 (+) False AMCG00013375
TU55045 other downstream 2272075 30218910 ~ 30222209 (+) False AMCG00013396

Expression Profile