RNA id: AMCG00013314


Basic Information

Item Value
RNA id AMCG00013314
length 219
RNA type mRNA
GC content 0.49
exon number 2
gene id AMCG00013314
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 27892338 ~ 27900889 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCAGCCCAGTTCCCGTCTGCCCAGTGACATAAGGAAGAATGGAGTAGAAATCATTGATGACCTGACGCACTTGGTGGACAAAACGGACAACAGGATTCGCAACGAAACGAAGAGGGTTAAACTTGTGGAGACAAAGGCTGCCTCCTGTGGTACGCTGTCCTCCTTTCCCTCGTCTCTCACAGTTAATGACATTCTCTGTGCCTTTGATCTGTTCTGA

Function

GO: NA

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54249 lncRNA downstream 175295 27714039 ~ 27717043 (-) True G43518
TU54156 lncRNA downstream 733609 27158301 ~ 27158729 (-) True G43435
TU54146 lncRNA downstream 765350 27126780 ~ 27126988 (-) True G43425
TU54137 lncRNA downstream 833096 27055552 ~ 27059242 (-) True G43417
TU54132 lncRNA downstream 842496 27049568 ~ 27049842 (-) True G43412
TU54335 lncRNA upstream 65123 27966012 ~ 27966233 (-) True G43590
TU54337 lncRNA upstream 159955 28060844 ~ 28061169 (-) True G43592
TU54338 lncRNA upstream 161360 28062249 ~ 28062453 (-) True G43593
TU54342 lncRNA upstream 169249 28070138 ~ 28072787 (-) False G43594
TU54394 lncRNA upstream 328521 28229410 ~ 28234706 (-) True G43626
AMCG00013306 mRNA downstream 103870 27774263 ~ 27788468 (-) True AMCG00013306
AMCG00013305 mRNA downstream 125110 27749632 ~ 27767228 (-) True AMCG00013305
AMCG00013309 mRNA downstream 146423 27744038 ~ 27745915 (-) True AMCG00013309
AMCG00013304 mRNA downstream 184966 27687865 ~ 27707372 (-) True AMCG00013304
AMCG00013301 mRNA downstream 211838 27672378 ~ 27680500 (-) True AMCG00013301
AMCG00013313 mRNA upstream 17033 27917922 ~ 27927327 (-) True AMCG00013313
AMCG00013318 mRNA upstream 173652 28074541 ~ 28078702 (-) True AMCG00013318
AMCG00013319 mRNA upstream 227779 28128668 ~ 28130132 (-) True AMCG00013319
AMCG00013325 mRNA upstream 296068 28196957 ~ 28199793 (-) True AMCG00013325
AMCG00013326 mRNA upstream 309514 28210403 ~ 28218058 (-) True AMCG00013326
TU54196 other downstream 323187 27568764 ~ 27569151 (-) True G43473
TU54172 other downstream 599265 27273229 ~ 27293073 (-) True AMCG00013295
TU53964 other downstream 1335014 26556354 ~ 26557324 (-) True AMCG00013264
TU53711 other downstream 2375375 25516080 ~ 25516963 (-) True G43070
TU53641 other downstream 2725580 25163983 ~ 25166758 (-) False AMCG00013223
TU54344 other upstream 167324 28068213 ~ 28072787 (-) True G43594
TU54456 other upstream 566423 28467312 ~ 28467906 (-) True G43684
TU54700 other upstream 1352507 29253396 ~ 29254316 (-) True G43869
TU54894 other upstream 2105875 30006764 ~ 30010700 (-) False G44034
TU54953 other upstream 2180147 30081036 ~ 30083345 (-) False AMCG00013386

Expression Profile