RNA id: AMCG00013317


Basic Information

Item Value
RNA id AMCG00013317
length 2679
RNA type mRNA
GC content 0.62
exon number 13
gene id AMCG00013317
representative False

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 28007514 ~ 28072799 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAAAGCAACACCTTTGATCCGTTCCTGTGCATCTCTCTTCCCATCCCTCTGCGCCAGACCAGACCCCTGTACGTGACACTGGTCTTCAGCACCAAGGGGCAGCGGTACCTGCGCGTGGGCCTGGCCGTCCCCCTGTTTGGCACGCTAGCCTGCCTGAGGGAGCTGGTGGCAGAGGAAGGGAAGATCTCCCCAGATCAGGTGATCCTGACCGAGATCTACACCACGGGGTTCCAGCGCTCCTTCTCCGATGAGGAGGATTTGACCAGCATCGCCGAGGGCGACAACATCTATGCCTTCCAGGCTCCGCCCCTCTACGGAAGGGGAGGCTCCGCACGATTCTCAGGTTACCATCACAGCCTACCCTCTTCCCCTTACACCTCTGGACCTGAAGGTCAAAGGTTACCTCCCACCGGCACCTTGTCCTCCGAGTTCTTGAACCACGGCAGCTCCTCGAAGATCCTCCTCCTCGTCTGTAACACGGCAGGGACCCGGCAGCAGGCAGTCAGaTTCGGGCCCCCGTTTCTCATGAGAGAAGACAGGACTGTAACCTGGGACCAATTACAACAGAGTATCCTCAGCAAACTCTACTACCTGATGATCAATGGAGCGCAGACGCAGAATGTAGGGGTCCTGTTTAAAATCCGAGTGGTGGGAGGATCAGCGGCCTACAGCTACCTGTCTCCTCAGGACAGCCGGCCTCTGTGCCACCCAGCCGTAGACAGGGCCCTGAAGTTCTGTGGACCGGGAGGACCTCCGCATGTGAAGCTCATCATCGAGTGGGAGCACAAGATCAAAGAGTGCCTGTTTGGCAACATCCAGGAGGAGGTGGTCCACGATGCGGACAGCGTCAGGGCCCAGCAGCAACAACACCTGCAGCAGCACAGTTGTACCCTGGACGAGTGCTTCACGCTGTACACCAAAGAGGAGCAGCTGGCCCCGGACGACGCGTGGAAGTGCCCGCACTGTAAGAAACTACAGCAGGGTATGGTGAAGCTCAGCCTGTGGACGCTGCCCGACATCCTCATCCTGCACCTGAAGCGCTTCCGGCAGGTGGGCGAGCGGCGCAACAAGCTCTCCACGCTAGTGCGCTTCCCGCTGACGGGCCTGGACATGGCACCCCACGTGGTCAAGAGGAGCCAGAGCGCCAAGACGCTGAACCCATGGCCCCCCGAGGCCGGCCAGCCACCCGACTTCCTGTACGACCTGTACGCCGTGTGTAACCACCACGGGGGGATGCATGGTGGCCACTACACAGCGTACTGCAGGAACTCAGTGGACGGGCAGTGGTACAGCTACGATGACAGCAGCGTGGATCTGGTGCCCGAGGAGGAGATCTGCACCCGCGGAGCCTACATCCTCTTCTACCAGAGACGGAACGCCATCCCCCCCTGGTCTGCCAGCAGCTCGATCAGAGGCTCCACCAGCTCCTCCATGTCTGATCACTGGCTCATCCGTCTGACGGGAGACAGCAAGAGAGGCAGCCTGGTGTCCCGAGTGTCGACCAACTGCGTCGCCTCCCTCCCCGACTCGCCCGAGTCCCCTGTCTTTCAGGACGAGCCCCTGAAGGAGGAGAGAGgcGGTTTTGACACCAGGCCATTTGTCCGCGGTATCCAGGGCAGGAGTGTCAGCATGAGGACGCCCACCAAGACCAAGGAGAGCATCGGCAAGGTGCTGCCCCTGCGCTGGTCCTTCGGGTCCAAGGACCGCAACAAGCCAGCGCCCGGGGAATTGGTGGAGTACCTGGAGTCGGGGCGCCGGCCGCGGTGCACCAAGGACTCCATCGTACCCTTGATGACGGTGACGAGTGACGAGGAGGGGGGGGGCGCTGCGGACGGGCGGACACAGGCTTCTGCCAGCCCGTCCCGGGGCATCGGCATGAGCTGCATGGGGAGGCCGAGTGGGGAGCCCTCGGACCCCAGCAGAGCACCCGAGGGGCAATCCAGACAGGCCAGCGAGAGGAGCAGCGCCTCGAGGAGGAGCAGCAAACAGAAGGATGACGGCACCCTGACCAGGAGGACGTCCAAGAAGACCAAGCAGGATCTGCCAGGAAAGCCTGAGGACACCTCTGCAGGGGGGCCCAGGAGGAGCTCCAGTGGGGTCATCCAGTCAGGCGCCAATCCGCCACCCAGCTGGGACACCACCTTGAAGAGGAGCAAGGCTTTAGCGGGCGCCAGGGATCGTGGGGATGGTGAACAGCAGTCGCCCCCAGAGGAGGACAAGGCGAGGAGGACCGAGGACACCAGGAGCCACGAAGGCAGGTTCTCCTTTTTAAAACCCAACTTCCTCAAGAAGGACTCCAGGAAGTCCAGGGAGTCAGAGGCGCACAGGAGCAGCGAGGCGAccagcagctcctccaggatcTCTCTCTCCAACGGCACGTTAAACAGGGCAGCCGAGGGCAAGGCCACCAGCAGCAGGAATAGGGAGGAGCTGGCCAATGGCAGGGTCAGCCGCTCCGCTGTGGACATCAAGCGCTCCCAGAGCTCCTCCAACATCCAGAGCAAATCCGAGCTGACTCTGCGGAGGACCGCCTCTCTGCACAAGAACGGTCTGTCCAACCCTGTGCCGCCACGCAGCGTCGCCTCCGACAAGCCCTCCTACGCCACGCTGCAGCGGACGCGCTACAGCACCGCGTCTCTGGGGAGGAAGAAGTCAGTGCCTGAATCAAGCTTCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54159 lncRNA upstream 589727 27270028 ~ 27417787 (+) True G43438
TU54122 lncRNA upstream 996863 27010372 ~ 27010651 (+) True G43402
TU54027 lncRNA upstream 1077261 26872821 ~ 26930253 (+) True G43326
TU54444 lncRNA downstream 320739 28389689 ~ 28389960 (+) True G43673
TU54481 lncRNA downstream 611860 28680810 ~ 28682174 (+) True AMCG00013336
TU54482 lncRNA downstream 611860 28680810 ~ 28682174 (+) False AMCG00013336
TU54489 lncRNA downstream 669173 28738123 ~ 28738753 (+) True G43712
TU54625 lncRNA downstream 1081028 29149978 ~ 29151334 (+) True G43810
AMCG00013312 mRNA upstream 54171 27952383 ~ 27953343 (+) True AMCG00013312
AMCG00013311 mRNA upstream 60679 27936413 ~ 27946835 (+) True AMCG00013311
AMCG00013310 mRNA upstream 72505 27928708 ~ 27935009 (+) True AMCG00013310
AMCG00013308 mRNA upstream 132030 27874493 ~ 27875484 (+) True AMCG00013308
AMCG00013307 mRNA upstream 193351 27811693 ~ 27814163 (+) True AMCG00013307
AMCG00013316 mRNA downstream 92380 28161330 ~ 28166776 (+) True AMCG00013316
AMCG00013315 mRNA downstream 103801 28172751 ~ 28179801 (+) True AMCG00013315
AMCG00013321 mRNA downstream 121485 28190435 ~ 28196943 (+) True AMCG00013321
AMCG00013322 mRNA downstream 130859 28199809 ~ 28208595 (+) True AMCG00013322
AMCG00013320 mRNA downstream 150116 28219066 ~ 28224436 (+) True AMCG00013320
TU54319 other upstream 71576 27934074 ~ 27935938 (+) False AMCG00013310
TU54201 other upstream 416696 27589139 ~ 27590818 (+) True G43476
TU54169 other upstream 592228 27385665 ~ 27415286 (+) True AMCG00013298
TU54155 other upstream 848793 27158302 ~ 27158721 (+) True G43434
TU54005 other upstream 1195899 26808164 ~ 26811615 (+) True G43309
TU54454 other downstream 415323 28484273 ~ 28488783 (+) True G43682
TU54615 other downstream 1035339 29104289 ~ 29104577 (+) True G43802
TU54772 other downstream 1571673 29640623 ~ 29658948 (+) False AMCG00013364
TU54850 other downstream 1852117 29921067 ~ 29928697 (+) False AMCG00013375
TU55045 other downstream 2149960 30218910 ~ 30222209 (+) False AMCG00013396

Expression Profile