RNA id: TU54325


Basic Information

Item Value
RNA id TU54325
length 4154
lncRNA type sense_over
GC content 0.40
exon number 1
gene id AMCG00013317
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 28007514 ~ 28072799 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACGGCACGTTAAACAGGGCAGCCGAGGGCAAGGCCACCAGCAGCAGGAATAGGGAGGAGCTGGCCAATGGCAGGGTCAGCCGCTCCGCTGTGGACATCAAGCGCTCCCAGAGCTCCTCCAACATCCAGAGCAAATCCGAGCTGACTCTGCGGAGGACCGCCTCTCTGCACAAGAACGGTCTGTCCAACCCTGTGCCGCCACGCAGCGTCGCCTCCGACAAGCCCTCCTACGCCACGCTGCAGCGGACGCGCTACAGCACCGCGTCTCTGGGGAGGAAGAAGTCAGTGCCTGAATCAAGCTTCTGAAGATGTGGGAGGGAAAATACAAAACCCGACTCAAAGCGTCTCCAAGTCAAGCAATATGTACCAAGTGTACAGTTTAGAACGTGTACCTCGTTTCCCAAGATGCACCACTCCCGCTGAAGGAGTCCTCAGTCGAGATGCTGATCTCGTCTCGAGAGAAACAACAGGCTGGATGTGACCCGTGGGGAATTAGCAGCCATTTTAATATGCAGAGAAAAGGCAGTTGTGTTATTGGGGAGATCGAGTGAGAAAAGCTCAGATTTAAGCAGAATGGGTGTTTCTTTAGATTTtatcagttctgtttttttatcgTTTTGTTCAGGGTGTCTTCGTGACACCTAAGCTGACAGTAAGTGCCTCTGTAAACTGATTTTCCAGTTCACAAACGTCTTTGGATACAAGTGTACAACAAGAGCATGTCTAGTTCACACAGATCTGGCACTCGTATCTCAACACCATGAACTGAGTTTCCCGAAAAggctcagatttatttttctttccctctttcttttggttttgtatgGAATTTGGAAGCGACATGTAGAAAAACAAGACATCTATGCAGAAACACAATCTAAAACAGAAGAAAGatgactattttatttatattttttgtatggcACCACTAAAGCAATTCACTCCCCGCATTCTTTGTAAATAGAAGTGGTTTAAAAGATACATATCAGTTAGTACTAACTTAGCTAACCACACCGTAACAAGCCGAGCTCTGTGAATAACgaacagattttatttgtgCTTGTATTTCATAATGGCTGCTAGATTTTAAGGCTCGtgatgacaaaaataatacaaatactgtatcgatacaaaaatgttttttttttacttttttgcactttttttatAAAGCCAACACCACCAAACCTTTACTTtgcctgcagtgtgtgtttgaaagTGACAATCTGAAACTGGCCCAAGAAAGTATAGACCATTTTCTTCATTAACTTTCTGCATCAGTAGTTTAAAtggattcatttttaattttcaaaaaacGAACTAAGAAAGGCAGTGTTAATGAACATGAAACAACCGGACACTTTTTTTCCACTGACAATCAACAGTAGCCTGTACTCTGAGATGgacaaacaatttattttaccaggtctttcctctctctctctctctctcttcatcagATAAGGCatgtttattatcttttttcatTGATCACTTAGATCAGTTTGTTCCAAAGAAATCATGTAACGTAAGATGGGTCAGCAGAGTGTGTTCATGAGAGAGGCTTATAACGTCTCCAGAACACGCAATGTGTTGAGTGTAGTGTTGGGGCAGTGCAGTGACCATGTTTACATTTGCAACAAGACTGTTAAACTGACTTCACACCTTGCCGTTGCTTGTGTTTAGGGAAGCAGACAGGGTCATTTGCTTAACAACCCCAATTTCAAAAATCAATCCAAACAAAAGAGATAACCACTTAAGTGTTTTATCACATACAAAAGCCATCAGTGACATGTGACCATGCCTTCTCGCCTCAGTTCTTTGGCACCACTCCTTGGCATTGAATGTCAAAGCTGGTTTGTTCTGACACTCCCATTCCTTCTGCTGTTTCAAGTCCTCTCTACACGCTTTGTCTGAGCTCCCATTGGCTCTCCCCCCCTTAACATTGACCGAAGAGGGTTACATTTTCGAGAATAACTCGGCACAGGCCTGGTCTTTATGCAGGAGAAGCTGACGTACTGCTCAATTCAGTCTGATCACTAAAATCTAGACCTTGTTTGTATCCGATAAGAAATGTCACCAGCCGAGCTAACCTAGAACACAAAGGCAGTCCGAATCCAGCTATGcataaaaacactgaagttCGGCTTGGAGACCAATTTGATTTTACGAGTCCGGTTTCCCAGAAAATAAATTGGCTGGAAGCATCATAGTTAaaatctttctctttcttaGAGTGTATGTCTGGCCTCACAGAGTTCATCATGTACTTGGCATAAGGTTGGCGATTTTATAATCCATGACCTTTACGAATTCACAACAGCAATACACCATTGCAGAGGACGTCCAGAAAGAGCTTCAAACTTGCAGACTTTTTTCGCATTATGATACCCTGAGCAGCTGCTGTGCTTTACATCTCATTTTTCATTGTATGGCAGTCTTTACGTTGTGCCGTAACTTATATGACACACATGCAGCCTGACTGGGGCATTAATTAATGCACCGGGGTCCTGTGTACAGAATTGAGTCTTCATCCTTCTCTTTTGCAGTTATTATTGCAGGAACAGTACTCTCACATTTTTCATATGCATAAACTTGTGCGCTAAAAGATTTCCCAGGTGGATATAAATCATCCCAGATACCATCCCTTCGGTCGTAGTAATTCCTCACGCCAGGAACCTTTCAGCCCTTTTACATCTAGAACAAAATGCTGGCAGCTCTTTGCAGTTTTATCTGAGTGCGACGATTACTTTGATCAATTGCTGTTAAGTGTAATGGAGGTCTCCCCAAGGGGAACTGAAAAATCACATATTACTCAATGAATctaactgtttattttctgcatcTTTGCTTTTTATGTGGAAGCTGGAGTCGTCTGCCGATTTAACATCTCCCAGCGGCGCTGTTTTCTTAGAATTTACCGGGATGAATGCTAAAATGGTTGTTTCGCCACAGATTGTGTATTTCTACACTATTcaagtcatttttttaacacCACTTACTATCATTTGCACACAGAACGATGATATGACTATGAACTCTTGCTCAACAGAACCATTTATTTCCAGATTctgtttttctcagttttccCAAAGTTACATCATTAATTGTGTAAGTGGCTTGTCATAACCCTTCTCAAGATCATTGGCAGTGCAATCTTAAGTGGCCGGGATCCTCCCTCTTGCACATAAAGTCCCAACAAGATCTCTATAGCTTTCTGGAAAAAACGGCAGGCGGTGGGGGGGTTTCTTTTGGTCTGTGATCATTAAAACTTCTGGGTTTAATGACAAACCAGAAGTCAACAGCAAAGTTTTGGTTTTCAGTATGTTTGTCCCTTATTAGATGTAATTCCACTCGAAGGAATTCTTGCCAAATTGCTGTATGTAAAAGGCATTAGTCAGagaatgtaaaagaaaaaaaaaaagcttgattaTCATAATTGTACAGTGGCCTTTATTATAAAGTTTGTACTGCATTTACGTCTTATCTTGCAGGCCCAAGAGTGCACATCCATATTCAGACGGATATTACCAGTGCagttcacatttaattatttgtttagtttcgGGTTTGTTTCATTGAATTGCTTTACAGAAGAAAAGGAACAGAGGATTAAAAATCTGAACAAGATCCAAAgcttgcattttgtatttgtttccaataTTAATGTCTTTGTTCCTGCTTCTCTTTACATCCATACACCACAAGCACCCAATCACAATGTTTACCAAAATGAGCActtgtaaaaacagaaataaaaaataatgagggaaaagaataaaaagaaaaaacttagTATGTGaatgaaggatttttttttttcagtacttTGTGAAATGTGTGGGGTTGAGATGTTTTTATATCCTTTTTTTGTAAGGTTTTACAATTTATACCTGCTTTGTAAATAATTGTAGATGTGAAATAATGTGGACTCTCGAGTTCTGTTCGGTGGGCTTGGTGTCGGAGGGTAAAGCACAAACGTAGAACTTCAATCAAGTCCATCTTGTCAGCTGTTGAAGGGTGGGTATAAAATGGGCCTAGCACACACgttataaaattataatgacAACAAAGGTTTGTATTTACCTAAGATGTCTGCTTTACATGatatatggttttatttttaatactgcaaataaaacacattatttatca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54159 lncRNA upstream 650859 27270028 ~ 27417787 (+) True G43438
TU54122 lncRNA upstream 1057995 27010372 ~ 27010651 (+) True G43402
TU54027 lncRNA upstream 1138393 26872821 ~ 26930253 (+) True G43326
TU54034 lncRNA upstream 1145507 26892614 ~ 26923139 (+) False AMCG00013281
TU54035 lncRNA upstream 1163683 26897509 ~ 26904963 (+) True AMCG00013286
TU54444 lncRNA downstream 316890 28389689 ~ 28389960 (+) True G43673
TU54481 lncRNA downstream 608011 28680810 ~ 28682174 (+) True AMCG00013336
TU54482 lncRNA downstream 608011 28680810 ~ 28682174 (+) False AMCG00013336
TU54489 lncRNA downstream 665324 28738123 ~ 28738753 (+) True G43712
TU54625 lncRNA downstream 1077179 29149978 ~ 29151334 (+) True G43810
AMCG00013312 mRNA upstream 115303 27952383 ~ 27953343 (+) True AMCG00013312
AMCG00013311 mRNA upstream 121811 27936413 ~ 27946835 (+) True AMCG00013311
AMCG00013310 mRNA upstream 133637 27928708 ~ 27935009 (+) True AMCG00013310
AMCG00013308 mRNA upstream 193162 27874493 ~ 27875484 (+) True AMCG00013308
AMCG00013307 mRNA upstream 254483 27811693 ~ 27814163 (+) True AMCG00013307
AMCG00013316 mRNA downstream 88531 28161330 ~ 28166776 (+) True AMCG00013316
AMCG00013315 mRNA downstream 99952 28172751 ~ 28179801 (+) True AMCG00013315
AMCG00013321 mRNA downstream 117636 28190435 ~ 28196943 (+) True AMCG00013321
AMCG00013322 mRNA downstream 127010 28199809 ~ 28208595 (+) True AMCG00013322
AMCG00013320 mRNA downstream 146267 28219066 ~ 28224436 (+) True AMCG00013320
TU54319 other upstream 132708 27934074 ~ 27935938 (+) False AMCG00013310
TU54201 other upstream 477828 27589139 ~ 27590818 (+) True G43476
TU54169 other upstream 653360 27385665 ~ 27415286 (+) True AMCG00013298
TU54155 other upstream 909925 27158302 ~ 27158721 (+) True G43434
TU54005 other upstream 1257031 26808164 ~ 26811615 (+) True G43309
TU54454 other downstream 411474 28484273 ~ 28488783 (+) True G43682
TU54615 other downstream 1031490 29104289 ~ 29104577 (+) True G43802
TU54772 other downstream 1567824 29640623 ~ 29658948 (+) False AMCG00013364
TU54850 other downstream 1848268 29921067 ~ 29928697 (+) False AMCG00013375
TU55045 other downstream 2146111 30218910 ~ 30222209 (+) False AMCG00013396

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
eurasian perch (Perca fluviatilis) TU9329 True 6576 TUCP 0.40 1 NC_053112.1 22981925 ~ 22988500 (-)
bowfin (Amia calva) TU9329 True 306 lncRNA 0.45 1 CM030121.1 44408360 ~ 44408665 (-)