RNA id: AMCG00013319


Basic Information

Item Value
RNA id AMCG00013319
length 1059
RNA type mRNA
GC content 0.56
exon number 2
gene id AMCG00013319
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 28128668 ~ 28130132 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTACTACCCTAAGATTTGCTTTTCAGCAGAAAAAGGCATTGCGTACACCAATGTCATCATGCCGAGCATCTTTGGGATCATCTGTTTCCTGGGCATCATAGGCAACTGCATCGTGATCTACACCATCGTGAAGAAGACCAAGTTCAGAGCCAAGCAGACAGTCCCCGACATCTTCATCTTCAACCTGTCCATCGTGGACCTGCTCTTCCTGCTGGGGATGCCCTTTCTGATCCACCAGCTGCTGGGCAATGGCTCATGGTGCTTTGGCTCCGTCATGTGCACCATCATCACCGCCCTGGACTCCAACAGCCAGATCGTGAGCACCTACATCCTCACCATGATGACCCTGGACAGATACCTGGCCACTGTCCACCCTATCAAGTCAAACTATGTGCGGACGCCCTGTGTGGCAGCCATGGTCATCTGCCTGGTGTGGCTCCTGTCCTTACTGACCATCATTCCTGTCTGGATGTACGCCGGCCTGATGCCCCTCAAGGACGGCACGGTGGGGTGTGCCCTCCTCTTGCCCAACCCTGCAACCGATGCCTACTGGTTCACCCTCTACCAGTTCATGCTAGCTTTCGCCTTCCCCCTCATCATCATCTGTGTGGTCTACTTCAAGATCCTCCAGCATATGTCCACAACGGTGGCCCCGCTGCCTCAGAGGAGCCTGAGGGTACGCACAAAAAAGGTGACCCGTATGGCCGTGGCAATTTGCCTGGCCTTCTTCATCTGCTGGGCTCCATACTACATCCTCCAGCTGGCTCATCTCGGGGTCCAGAGGCCCTCTGTGGCCTTCTTCTATGCCTACAACATCGCCATCAGCATGGGATACGCCAACAGCTGCATCAACCCCTTCCTCTACATCATCCTCAGCGAGACCTTCAAGCGGCAGTTCATTGTGGCGATCCGGCCGGCACACAAGGAGTTCCGGGTGAACAACAGCATGACGGAGGGCAGTGTGAGTTTGAGGATGGCGGCGGAGTCCACGCAGCAGTCGCATTTCTCTGGAGAGTTCTCCCACAACGTGCTGCCAGTCACCGTAGCCGTTCACTGA

Function

GO: NA

KEGG:

id description
K04320 MCHR1; melanin-concentrating hormone receptor 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54342 lncRNA downstream 55881 28070138 ~ 28072787 (-) False G43594
TU54338 lncRNA downstream 66215 28062249 ~ 28062453 (-) True G43593
TU54337 lncRNA downstream 67499 28060844 ~ 28061169 (-) True G43592
TU54335 lncRNA downstream 162435 27966012 ~ 27966233 (-) True G43590
TU54249 lncRNA downstream 411625 27714039 ~ 27717043 (-) True G43518
TU54394 lncRNA upstream 99278 28229410 ~ 28234706 (-) True G43626
TU54439 lncRNA upstream 213145 28343277 ~ 28347474 (-) True G43670
TU54457 lncRNA upstream 340202 28470334 ~ 28470537 (-) True G43685
TU54458 lncRNA upstream 344976 28475108 ~ 28475326 (-) True G43686
TU54459 lncRNA upstream 345324 28475456 ~ 28476100 (-) True G43687
AMCG00013318 mRNA downstream 49966 28074541 ~ 28078702 (-) True AMCG00013318
AMCG00013313 mRNA downstream 201341 27917922 ~ 27927327 (-) True AMCG00013313
AMCG00013314 mRNA downstream 227779 27892338 ~ 27900889 (-) True AMCG00013314
AMCG00013306 mRNA downstream 340200 27774263 ~ 27788468 (-) True AMCG00013306
AMCG00013305 mRNA downstream 361440 27749632 ~ 27767228 (-) True AMCG00013305
AMCG00013325 mRNA upstream 66825 28196957 ~ 28199793 (-) True AMCG00013325
AMCG00013326 mRNA upstream 80271 28210403 ~ 28218058 (-) True AMCG00013326
AMCG00013331 mRNA upstream 362814 28492946 ~ 28495999 (-) True AMCG00013331
AMCG00013332 mRNA upstream 371890 28502022 ~ 28521437 (-) True AMCG00013332
AMCG00013339 mRNA upstream 641801 28771933 ~ 28777474 (-) True AMCG00013339
TU54344 other downstream 55881 28068213 ~ 28072787 (-) True G43594
TU54196 other downstream 559517 27568764 ~ 27569151 (-) True G43473
TU54172 other downstream 835595 27273229 ~ 27293073 (-) True AMCG00013295
TU53964 other downstream 1571344 26556354 ~ 26557324 (-) True AMCG00013264
TU53711 other downstream 2611705 25516080 ~ 25516963 (-) True G43070
TU54456 other upstream 337180 28467312 ~ 28467906 (-) True G43684
TU54700 other upstream 1123264 29253396 ~ 29254316 (-) True G43869
TU54894 other upstream 1876632 30006764 ~ 30010700 (-) False G44034
TU54953 other upstream 1950904 30081036 ~ 30083345 (-) False AMCG00013386
TU54954 other upstream 1950904 30081036 ~ 30083345 (-) True AMCG00013386

Expression Profile