RNA id: AMCG00013320


Basic Information

Item Value
RNA id AMCG00013320
length 1899
RNA type mRNA
GC content 0.40
exon number 4
gene id AMCG00013320
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 28219066 ~ 28224436 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGCATTGTCTCGTGTGCGCGCACGCAATGCCGGTTTAATGTTCGGCGGCGCGGACGTGCGCGTCCCCGAAGACTCTTTGTGTGGCGGCGTAGAGAAACGCGGAGAGAATAGCCATGGCGGACGAAAAACCCAAGGAAGGCGTTAAGACGGAAAACAACGACCATATTAACCTGAAGGTGGCTGGGCAGGACGGCTCAGTGGTGCAGTTTAAGATCAAGAGGCACACGCCACTCAGCAAACTCATGAAAGCATACTGCGAGAGACAGGGCTTGACGATGAGGCAAATCCGATTCCGGTTTGATGGGCAGCCAATCAACGAGACAGACACACCTGCACAGTTGGAAATGGAAGATGAAGACACGATCGATGTTTTTCAGCAACAAACAGGAGGTCTCTACTAAAAGCAACACattcacccccccctcccctctttcCAAATACTGTTCCTTTGCAAACTCTTCCCATTATCACTGCAGGATAAGTTCAGTACAAAATTAGAGAGGATTTCACAGTTATACTTAACTACTGTTGTATagtgttttcattcttttttttgtttgtacataATTAACCTCAAGTGTTGGCAAACACTCGTTTAGCTACCAAGAAGTGGCCCGTCTGACAACTTTGaccaaaacacagaaagcagaCTGGGAATCTGATCCCAAATTGTTGGGGATTGTGGTGAAGTCTTTCCAAAATAAAGTTTCCCAGTAAGTTATTTTTATCTCATTCTTTGGGAGATTGAGATTTACTGGTTTTCTGACTTTCTTTTATCATCATCAGAAGATGGattttatatctttttttttttttatatattgtagtgATTGTGTAGAATGGATCTTGTCTTAAAAGTAGTTTGATTAGGCCATATGTTAAAAGGACGCCCTGCTATGGGGTTTCTAAAGTCAGACAtctgtattgtttaataaatttcttgttaaaataaaaatattctctttttttaattaaacttttttttgtcttttgcatCAACCATGTAAAGCTGATGTTGTGAAATGGGAGAGCAGTGGGAGTACAGGACAAAGCGCTGTGAAATTCTGTGCATCGGTCATTGATCAGCAGTATAAGCTCATTCGGTAGTCTCTTTAGGTCTTTTAATAGCCTTTTTACACTTATAATACAACATAAATCATGAAACCCTAGGCGGTGTTATACCATCCTAATTCAGTTGATGTTTAGAGTGTGGGTGTTAAACTGCTGATCTGGAATTTAAGCGAactgattttcttttgattgAAAATTCCACATAGCTCAGAGTGAACACAAAAGCAATACCATGATCTCATGCGTTCCTGTATAGAGCACCCAGGGGTTTTAAGGCAGTCCCTTGCTGTAGAAGCTGGTACAAGGTTTGGCTTTTCTAGACTCCTAGAGTGTAAATACTTAAGTGGAACGCACAGTTTCTTCAGTGAGGTATGGATCTGTGGTGCTTCAGCTGTGCCTTAATCTCTCCAGTGAACTGGACCTGATCCAGAACATTCATAGCCTGTATAACTGTTTGTGTATAGTtgcattgtattcattttaagaaTTAAAGCTTTAATCTTTTCAGTGGCAGACCCTATCCTTCCCCCATGGAGATTTCAATCCagaaaatgtctgtgtgtgattatgTGCAGGTCTTTAATAAGGGAGCATCCTCATTTATTCCTGCTCTTCACAGGATGCTTTGAAGCCGAGACCTTCAATAACTTTAGTGTAATGCCGTCATTTGACAACTTGCAAGCTCTAAAAATCTAAACGGAATAGATGTCCTGATTTTCAATGTTATGGTTTTTAAACCCGAGTCCAaaccattattttgtattgcaacATAGACTGATTAAGTGCTGCTTCAAACTGCATTTTCTGTGGCTTTGATATAAATTGCGT

Function

GO:

id name namespace
GO:0016925 protein sumoylation biological_process
GO:0009790 embryo development biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K12160 SUMO, SMT3; small ubiquitin-related modifier

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54325 lncRNA upstream 146267 28068646 ~ 28072799 (+) True AMCG00013317
TU54159 lncRNA upstream 801279 27270028 ~ 27417787 (+) True G43438
TU54122 lncRNA upstream 1208415 27010372 ~ 27010651 (+) True G43402
TU54034 lncRNA upstream 1295927 26892614 ~ 26923139 (+) False AMCG00013281
TU54444 lncRNA downstream 165253 28389689 ~ 28389960 (+) True G43673
TU54481 lncRNA downstream 456374 28680810 ~ 28682174 (+) True AMCG00013336
TU54482 lncRNA downstream 456374 28680810 ~ 28682174 (+) False AMCG00013336
TU54489 lncRNA downstream 513687 28738123 ~ 28738753 (+) True G43712
TU54625 lncRNA downstream 925542 29149978 ~ 29151334 (+) True G43810
AMCG00013322 mRNA upstream 10471 28199809 ~ 28208595 (+) True AMCG00013322
AMCG00013321 mRNA upstream 22123 28190435 ~ 28196943 (+) True AMCG00013321
AMCG00013315 mRNA upstream 39265 28172751 ~ 28179801 (+) True AMCG00013315
AMCG00013316 mRNA upstream 52290 28161330 ~ 28166776 (+) True AMCG00013316
AMCG00013317 mRNA upstream 150116 28007514 ~ 28068950 (+) False AMCG00013317
AMCG00013324 mRNA downstream 3133 28227569 ~ 28234482 (+) True AMCG00013324
AMCG00013323 mRNA downstream 12347 28236783 ~ 28254407 (+) True AMCG00013323
AMCG00013328 mRNA downstream 78917 28303353 ~ 28305608 (+) True AMCG00013328
AMCG00013327 mRNA downstream 98473 28322909 ~ 28343487 (+) True AMCG00013327
AMCG00013329 mRNA downstream 239926 28464362 ~ 28483978 (+) True AMCG00013329
TU54319 other upstream 283128 27934074 ~ 27935938 (+) False AMCG00013310
TU54201 other upstream 628248 27589139 ~ 27590818 (+) True G43476
TU54169 other upstream 803780 27385665 ~ 27415286 (+) True AMCG00013298
TU54155 other upstream 1060345 27158302 ~ 27158721 (+) True G43434
TU54005 other upstream 1407451 26808164 ~ 26811615 (+) True G43309
TU54454 other downstream 259837 28484273 ~ 28488783 (+) True G43682
TU54615 other downstream 879853 29104289 ~ 29104577 (+) True G43802
TU54772 other downstream 1416187 29640623 ~ 29658948 (+) False AMCG00013364
TU54850 other downstream 1696631 29921067 ~ 29928697 (+) False AMCG00013375
TU55045 other downstream 1994474 30218910 ~ 30222209 (+) False AMCG00013396

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
striped catfish (Pangasianodon hypophthalmus) TU474032 False 1026 TUCP 0.43 4 NC_047623.1 3224100 ~ 3234301 (-)