RNA id: AMCG00013321


Basic Information

Item Value
RNA id AMCG00013321
length 4393
RNA type mRNA
GC content 0.43
exon number 6
gene id AMCG00013321
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 28190435 ~ 28196943 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TACAGGTTTGGGCAGATGGACACAGTGTCGCAGTGACTGGCGCGCTTATTACGTCATTTCGCGATAATAACTTCCACTGCGTGACGTAAGAACTGCCTGCAGAGAAAGCGCTTGCAATTTCGGAAcgtgttttatgtattttCCAGGGATTTCCAGTCTGTGTGCGACTTGTCCAAATTGGCGGTGTGCCCGGGAACCATGGAGAACTCTGGCAAGGAGGAATACAAGATCCAGTCCTTCGACATCGAGACACAGCAGCTACTCAAAACTGCACTGAAAGAGCCGAGCACCGTGGATCTGGAGAAGGTGGCCAATGTCATTGTAGACCAGTCTCTGAAGGACCAGGTGTTCAGCAAAGAGGCCGGCAGGATCTGCTACACCATAGTCCAGGCCGAGGCCAAGCAGAACAACGCCAACGTGTTCCGGCGGAATCTCCTGAACCGACTACAGCAGGAGTTCAAGAACCGTGAGGAGACGCGCGGCCGCTCCCTGCAGGAGTGGGTGTGCTACGTCACGTTCATCTGCAATGTCTTCGACTACCTCAAGGTGGGCACCCCGGCCCGGGTGAACAACATGCCCATGATGGCGCTGGTCCACCCGGTGTACGACTGCCTGTTCAGACTGGGCCAGCCGGACTCCCTGCAGAACGAGGAGGAGgtgGACTGCCTGGTGCTGCAGCTGCACCGCATCGGTGACCAGCTGGAGAAGATGAACGTGCAGCGCATGGACGAGCTGTTCTTCCTGCTGAGGGACGGCTTCCTGCTCCAGGAGGGGCTGGGCTCGCTGGCCCGGCTGCTGCTGCTCGAGGTGCTGGAGTTCAGGGCTGGGGGCTGGCGGCTCAGCGACACGGCGCAGAAATACTACTACAGCGAGGTCTCCGACTGAGCCGGGGCCGGGGAAGGGGAAGGGATGCCAGGCTGATGGgcatggagacagagagagagggagggaaatgtAGAGTCACTTTGATTTATAGACTTCACTGTCAGGCAGAGATGGGGAAGAAGCAGAGACTGGGGAAGATCACAACCCCAGTTACACAGGATTTAAtcacatgtaaaaaaaaatatatataggattTGAACAGTGGGTTGGTTAATTTCTacataataatcctaacaaatgacatgtgtgtgtatattagaTTGAAGAAAGCACTGGTATGGTTTCAGATTGGCCAGTTTGTTCTGTGCCACCAGGTAGGTCAGCTAAGTGCCAACGCCATGTTGAATAACAGGGGAGACGAGGGAGGAGGTTTGAAATTCAAACTGAGTCCTTAATTCACTTTCCTTCGTTacacgtttttatttatttatctatattgttttaatgattgcatttttatgtttgGTGAGATTccggaggaggggagagagtgaTATCGTGCCATGTCCAGggtgccgtgccgtgccatgcATCGTTTCCCGTTACGGATCCAGGCCTCCCTGTAGTGACCAGGCTTTCTGGTGCGGCTCTGTCCTGGGATCTTGAAATATCTGGCCTCAATATCTGATATTTCTCATACCTGGTGTGGACATTGTAGTGCAAGTCCCACCAGGCTTCCTCCTGCTACATTTGGGTCATTTACAGTTGTCTTTTGGAATTCAATTAATCAGTCGATTGCAGTTCAGTGACCCCGTTGTCCTGCTTCAGATTTAGAAATGCAACAAACCCATGATTGGCTGATCTCTGCCTATTTTACTCCGTGACCATTACAATATCcaatttatgtgtttttatttatttttttatacgttacattttatgttgtaaTTCTGCAGCATAATTGCTATTGCTCAAACTACGGATATCGTCCTAATTCAGACTCGCAAAAATGTCTGTAGttgtaattacaattataattggCCGGGGACCTGAGAAAGAAACTGCAAAAGCTTAAGACattggaaaaaatatgaatccaCCATCttcatagaaaaatatacatttgttcctgttatatttttttctgactaGAGTTTTTCAAATTATGGTATTGTATAAATCGGTTTTAATAGTCCCAAGCAGGCTAGGACTACCGCCAGCAATCACTCACACTGCCAACACAAGCTTAGCAGTCAATTCGCGATCCAAGCCAttgctctgctgctgctgcactgcAACATACCCGACACTGACGGATAACTGACCCTCTCAAACTGAACTGGAAGGGAGTTGGTACGGATGCACATATGTACGTACTCTAGGACCGCTATCGtcgtgttttcttttctcaccGGAGCAACATTGAGCATTGTCACGTGGGCGTTTATTGTCGCCGATACGGGGGCTGGGGGAAGTGTTTCGATGGAATTAGAAAGGTTGCTTGACTTTTGGCCAAAGATGGCGCGCACTGCCTGACGCCAGCTGACATGCCTGACCTCCGCAGCACACTTGATGGCTGGCGAAGGAAGGGCTGCCCTGGCAGTGAGTTAATATACTGCTGAGTCTGCATCATGGTCTCGGAGCTGGAAGCTATGCGGAGAGAGAGGTGCCAGTATATTTAACTAACTCGCTGGGAATTTCACTAACGCCATAGATACACAAATTCAGCCTTCTTTTAATCGCACGTCGAGTCTTACTTTGAAATGGAATATTACACgtcaaaatcaattaaaagaaTAACAGACATTTAAGTTAATGTAACAAGCTCTTAAAAAACAGGTCCTTGCTGAAGAGCAGGGGTATATGTTGGGAAGAGGAACTAAGGGCCAGTGCATCCTTGAATAAAACCTCAgtgagttaaaaaataaaacactggttCACAATCATCAGCACCCTGCGAGATTGACATTCCTCTTCACGTATGTTTCACACAGatgggtgtttttgtttttcataatgagCAACCAAAAGCGCTCCCTGCATGGAGGTTACAGGTTCTGATGGGTCGCCAGGAGAATGTTCTGTTCCGGAGGTCGGGTTCTGTCCCGGCGATTCTCATTCTAACCCCCTGCTGCTTGAACACCCTGGAGGTGAACCTGCTTTTGGCTCTGTCAAGGATTCACTGCTTATTGGAACAACTTCTTATGGCATCTATAACTTTTCTACACAGATTTTGATACAgaatttatctttattttttattttgtcttttgaagGTCGTTCTACCAGAGCTTGAACCACTTTCTGGtgctaattataaaatgtatatattgccGGTATGATtaggaattcaaaataaaatatataaaaatgctttttaaggAGCTAAAGGCTAACCCACACAATCccattacataaatatattttcccctgATCATAACCCATTATGATGCTGGGAATACTGTACTGGGAATGGTTTTCTATGCTTTTTCAATTGACCATTTCCTCATTTAAGTAGCTCTTTGCTAGACTGTTTCAGCTGGATATTTCCCAAAAGATGAAAACTTGAAGACTCTCTAGTCTTAGAATGTATTTCCATATCAGTTCTTCAGGATAATTTCAAAGTACCGTTGTCCATTTCATCAAGGAGTTAAGGTTTGTCGAATGCCCactgatatatttatatgatcATCATGGGGCGGTGGCAGTCCTAGATTATTTACAGGACTAATTATATCAATTACATGTATGGATTGTGTGGGCTGCTTTTAGAAATGCAGTAtttgtgatacattttttttaatttattttttttaatgtgttttcgGTGGTTCGGTATTTTGACAACTTTGGAAAAAACGGTATTTAGTAAGGAATTAGGaatattttggtttgtgtttaacTGCTAATTTAGCATGACTTGCTTTGACTGATCTTTGATCTGAATGATGACACCTGTATAAATGACATTTCTACCAATCTGATactgatttatatttcaatGGATAGAATGATTGAAAATTCAGACCCTTGCTCACTAAGATGGAAGAATTCAGTTTTACCTGATGTATTTCAAAGCCTTAACTGCTTTACACAgcatattatataattacatacacagtgcagtgtgaaaCTGTggattttataataaaacaatgaggTGCAGCTTAGATAAAATACGTGCTCAGCCATACGTGGGGTTCTGGAGAACTGGAGTCAAGAACCCTAGgtttttaaaagctgaaatCTCACTTAAACTTCCCTTCCCAAAAAAGCATGATGCCCTTGTGGCAGGTTTCACTATTCAGGTctgatttgtaattgtttatagGTGTTCTTATGGCTACAGATTGAGGTCTAATGGGGTTTTCCTTAAAGCGAAGGGAATTAATAGGATTTCTGTTAATAGTGATTAACATTCATGAGAAATgttgatttttctctttttgtactGATGAATTTATACTTTGATAGATGTTTcacatgtttttcttccccaACATACAAAGATTGTAGAGAAAATATAGTTAAGAGTTTTGAATTgttaaaaactataataataaaaaag

Function

GO:

id name namespace
GO:0006417 regulation of translation biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003723 RNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54325 lncRNA upstream 117636 28068646 ~ 28072799 (+) True AMCG00013317
TU54159 lncRNA upstream 772648 27270028 ~ 27417787 (+) True G43438
TU54122 lncRNA upstream 1179784 27010372 ~ 27010651 (+) True G43402
TU54034 lncRNA upstream 1267296 26892614 ~ 26923139 (+) False AMCG00013281
TU54444 lncRNA downstream 192746 28389689 ~ 28389960 (+) True G43673
TU54481 lncRNA downstream 483867 28680810 ~ 28682174 (+) True AMCG00013336
TU54482 lncRNA downstream 483867 28680810 ~ 28682174 (+) False AMCG00013336
TU54489 lncRNA downstream 541180 28738123 ~ 28738753 (+) True G43712
TU54625 lncRNA downstream 953035 29149978 ~ 29151334 (+) True G43810
AMCG00013315 mRNA upstream 10634 28172751 ~ 28179801 (+) True AMCG00013315
AMCG00013316 mRNA upstream 23659 28161330 ~ 28166776 (+) True AMCG00013316
AMCG00013317 mRNA upstream 121485 28007514 ~ 28068950 (+) False AMCG00013317
AMCG00013312 mRNA upstream 237092 27952383 ~ 27953343 (+) True AMCG00013312
AMCG00013311 mRNA upstream 243600 27936413 ~ 27946835 (+) True AMCG00013311
AMCG00013322 mRNA downstream 2866 28199809 ~ 28208595 (+) True AMCG00013322
AMCG00013320 mRNA downstream 22123 28219066 ~ 28224436 (+) True AMCG00013320
AMCG00013324 mRNA downstream 30626 28227569 ~ 28234482 (+) True AMCG00013324
AMCG00013323 mRNA downstream 39840 28236783 ~ 28254407 (+) True AMCG00013323
AMCG00013328 mRNA downstream 106410 28303353 ~ 28305608 (+) True AMCG00013328
TU54319 other upstream 254497 27934074 ~ 27935938 (+) False AMCG00013310
TU54201 other upstream 599617 27589139 ~ 27590818 (+) True G43476
TU54169 other upstream 775149 27385665 ~ 27415286 (+) True AMCG00013298
TU54155 other upstream 1031714 27158302 ~ 27158721 (+) True G43434
TU54005 other upstream 1378820 26808164 ~ 26811615 (+) True G43309
TU54454 other downstream 287330 28484273 ~ 28488783 (+) True G43682
TU54615 other downstream 907346 29104289 ~ 29104577 (+) True G43802
TU54772 other downstream 1443680 29640623 ~ 29658948 (+) False AMCG00013364
TU54850 other downstream 1724124 29921067 ~ 29928697 (+) False AMCG00013375
TU55045 other downstream 2021967 30218910 ~ 30222209 (+) False AMCG00013396

Expression Profile