RNA id: AMCG00013322


Basic Information

Item Value
RNA id AMCG00013322
length 2474
RNA type mRNA
GC content 0.58
exon number 15
gene id AMCG00013322
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 28199809 ~ 28208595 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACAAGTCTCGTCTGGTCTCGCCGAGGCGCAGTACTCTCGCGATGATTCCAGCGCTGTGAATATGGCGGATCCGGAAGGGGAGTCGCTGGAGTCTTGGCTCAATAAAGCCACAAACCCCTCCAACAGACAGGAAGACTGGGAATACATCATAGGGTTCTGTGACCAAATCAATAAGGAATTGGAAGGGTATGGGATTGAAACTGATCCGTCTTTAGCCACAAAAAATATAGCTGTCAGGTTGCTGGCTCATAAAATCCAGTCTCCTCAGGAATGGGAGGCCATACAGGCATTGACATACCTGGGTGACCGGGTATCAGAAAGGGTGAAGACAAAAGTGATCAAAATGCTGTACAGCTGGGCCGTGGCCCTGCCCGACGAAGCCAAAATCAATGAAGCCTATCAGATGTTAAAACGCCAAGGCATTGTTACTTCGGACCCGGAGATCCCCGTAGATAAGACTCTGATTCCCTCTCCCCCGGCCCGGCCCAAGAACCCTGTTTTTGAGAATGAGGAGAAGAGCAAGGACGAAGCCCGGATGCAGAAGGTGACGAAGCGCGTGAACACCCTGGAGGAGGTCAACAACAATGTGAAGCTCCTCAACGAGATGCTGACGCACTTCAACCGGGAGGAGTCCTCCGAGGCGGACAAGGAGCTGATCAAGGAGCTGTACGATCGCTGTGACAAGCTGAGACGCACTGTGTTCAAACTGGCCACTGAGACGGAGGACAACGACAACAGCTTAGGTGACATCCTGCAGGCGAGCGACGATCTCTCCCGGGTCATTAACTCCTACAAGAGGACGGTGGAGGGGCTGGCGGTCAACGGAGAGATCGACGCTCTGGGATCATCAGCTAGTGAACGAAGTAAAGGCAGCAGCAACACGGAGACTCTCATTGACCTGGCTGGCCCTGATGAGCCAAgcccctcccccccagaagCAGTTCACCCCCAACTTCCTCTGGAAACCCCACCCAACCCACTGCTGCTAGCCCCGGCCAATCCCCCGCCAATGTCGGCCGATCCCAGGCCACTCCCAGCCAATCTGCTCGTAGCTTCCGCCAATGCTCTGGTGGCCTCCTCGATTCCGGTcctgcccccgcccccccaggGGTCGGCCGGGTCCCAGAGCTGCCCCGTTGGCCAGTGTGAGGGCCCTGCCCTTCAGCTGACGGGCAACAGCTACACTGCCCTCTCTCTGCTGGACGAAGAGCTGCTCTCTCTagGGTTGAATGATCCTGCACCCACTTTAAACCACCCAAAGGAGGAGACATTGGACAGTCAGTGGACATCTCTGCAGgCTCCCAATCCCGGGCTGGACTTCTTCAGCAGCCCAGCTCTGTCTGGCTCTGGTACTCCCCCCCTGGGGTCCCTGTTCCCTGCAGTGGCCCGGCCCTCTGGCTCTGTGCCTCGGGCTGCTGTCGGGCCCTACCCTGCCACTCCCAAAAGCAGCTCCTACCAGTTTGCCAGCGCCACACACCCGGGCTCTGCGTCCGTCAACCAGGGCCTGCAAGACCTGACCATGCTGGACCTCGGGGAGCCCAGGAGCGTGCCCCCACAGTCACATGCTGGACCCATGCTTGGCCCCACACACTCCTCCCTGCTGGAGTTCCCCAGGGTCCCCAGCACGACCACAGCCCCCCTGAGTGGTGTGACAGCCCACACCCTGGCTCAGACCATGAGCTCCTCCACCCCGGGGAGCCCCCTCTTTCGCTCGCTGTCCCCCGTCCACCTACCCCCCCAGGGCAGTCCGCTGAAAGGGGTCGACTCCTCTCTGGCCAACGTCCACGTCCCTCTGGACTCCATCAAACCCAGCAAGGTCCTGCCCGTCACTGCCTATGACAAGGACGGGGTGCGTGTCCTGCTGCACTTCGCCTTGGAGTGCCCCCCCGGGCGGCCGGACGTGCTGGTGATCGTGGTGTCGATGCTCAACACCGCCCCCCTGCCCGTGAGGAACGTCGTCCTGCAGGCCGCCGTGCCCAAGTCGATGAAGGTCAAGCTGCAGCCCCCCTCCGGGACGGAACTGGCGCCCTTTAACCCCATCCTGCCCCCTGCAGCCATCACTCAAGTCATGCTCCTAGCTAACCCTTTGAAGGAGAAAGTGAGGCTGAGGTACAAGCTGATGTTCAGTCTGGGGGAGCAGCAGTGCACGGAGGTGGGAGAAGTAGACCAGTTTCCTCCAGCGGAGAAATGGGGTAACCTATAGCCCCCCACAAGGGACAGGACAGGGTGCCCCGATGTGTCGCGGCAGAGATCCTTACTTAGCTGAGAGAGAAATCAACGCGCTGATGAATGTTTTCTTGGGTAGGCAAGTGCTATTAACGTTACAGAAACCATTCTCCACAAACCTGAGTGtcttatcttttttgtttttgtttgattgttgtcTCTTACACTCCCTGCAACTCTTAACACCCCTCTGCCCTGGGCTGTTGTTTAAAAGACTGCACTTTACCTGACCTTAGTTTACTggaag

Function

GO: NA

KEGG:

id description
K12404 GGA; ADP-ribosylation factor-binding protein GGA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54325 lncRNA upstream 127010 28068646 ~ 28072799 (+) True AMCG00013317
TU54159 lncRNA upstream 782022 27270028 ~ 27417787 (+) True G43438
TU54122 lncRNA upstream 1189158 27010372 ~ 27010651 (+) True G43402
TU54034 lncRNA upstream 1276670 26892614 ~ 26923139 (+) False AMCG00013281
TU54444 lncRNA downstream 181094 28389689 ~ 28389960 (+) True G43673
TU54481 lncRNA downstream 472215 28680810 ~ 28682174 (+) True AMCG00013336
TU54482 lncRNA downstream 472215 28680810 ~ 28682174 (+) False AMCG00013336
TU54489 lncRNA downstream 529528 28738123 ~ 28738753 (+) True G43712
TU54625 lncRNA downstream 941383 29149978 ~ 29151334 (+) True G43810
AMCG00013321 mRNA upstream 2866 28190435 ~ 28196943 (+) True AMCG00013321
AMCG00013315 mRNA upstream 20008 28172751 ~ 28179801 (+) True AMCG00013315
AMCG00013316 mRNA upstream 33033 28161330 ~ 28166776 (+) True AMCG00013316
AMCG00013317 mRNA upstream 130859 28007514 ~ 28068950 (+) False AMCG00013317
AMCG00013312 mRNA upstream 246466 27952383 ~ 27953343 (+) True AMCG00013312
AMCG00013320 mRNA downstream 10471 28219066 ~ 28224436 (+) True AMCG00013320
AMCG00013324 mRNA downstream 18974 28227569 ~ 28234482 (+) True AMCG00013324
AMCG00013323 mRNA downstream 28188 28236783 ~ 28254407 (+) True AMCG00013323
AMCG00013328 mRNA downstream 94758 28303353 ~ 28305608 (+) True AMCG00013328
AMCG00013327 mRNA downstream 114314 28322909 ~ 28343487 (+) True AMCG00013327
TU54319 other upstream 263871 27934074 ~ 27935938 (+) False AMCG00013310
TU54201 other upstream 608991 27589139 ~ 27590818 (+) True G43476
TU54169 other upstream 784523 27385665 ~ 27415286 (+) True AMCG00013298
TU54155 other upstream 1041088 27158302 ~ 27158721 (+) True G43434
TU54005 other upstream 1388194 26808164 ~ 26811615 (+) True G43309
TU54454 other downstream 275678 28484273 ~ 28488783 (+) True G43682
TU54615 other downstream 895694 29104289 ~ 29104577 (+) True G43802
TU54772 other downstream 1432028 29640623 ~ 29658948 (+) False AMCG00013364
TU54850 other downstream 1712472 29921067 ~ 29928697 (+) False AMCG00013375
TU55045 other downstream 2010315 30218910 ~ 30222209 (+) False AMCG00013396

Expression Profile