RNA id: AMCG00013323


Basic Information

Item Value
RNA id AMCG00013323
length 3226
RNA type mRNA
GC content 0.44
exon number 12
gene id AMCG00013323
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 28236783 ~ 28254407 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTGAATATAATAAACTGCTGGTGCTGAAGTGTTCATGTTGTTAATCTAGTAGGCGGCTTCAGAATTCCCCTTCAGATCGAAAGTGAAAGTATTTGTAACGTTCACTTCTTGTTTTGGTTCTCTCGGGATGTGCACGGATAgcattctggaaaaaaacataaagttCAATTATAAACTGCTGTCAGCTGGACTCGGGTTTATGTTGAAACCGTGAACACTGAAATATGGCTCCAGCTGCCTGGCAATTCTGTGTGACTTTTATCGCTGTCATCAGATTATCGTTCTCTACTGACCATCTGTTGAAAATGGAGTGCAAGGGTCAACACAAATCTGTGTTTGGCCAAGATACAAAACTGGAGTGCTTTTTGAAGTCCCCCTATAATGAATTTACAATCATAAAGCTGCTGTGGAAGAAGGAGAACACAGAAGATGCACTGTTTAAGTTTTTCTCAGGAATGGCAGATCCAGGCAATGATCCCCGATTTGAACGTTTACAACCGGGGAACTGCACGGACGTCTCGTTGTTGGTGAAAAACACCAAGATAACAGACGAAGGGAAATACACATGCCTTGCAGTGACTGACCGTGGCCATGCCATTGCGGAAACAATCCTATCAGTCTCAGCTCCGTACACAAACCCCGTCATGAGCTCAATGCCAGCAAAGAACATCAGAGACGACATGACGGTGACGATGTTCTGTAACGTGTCGGGGGGCTACCCAGAGGGACGCATCCAGTGGTATGACGAGTATAACACGGACTGGACCCGGAGCTCAGAGACCCAATCCGTGCAAACCAAGGACAGACGGTACAACTTGACCAGCACATTCACTGTGACAGCCTCGTCTACAACCAAGCAGTACAGTTGCTCTGTTTTCAACTCGGATGACCTCAAAGAAGGAGAACAAGAATTGAATCTCATGtttgGGCCTGACAAGCAAGAAGGAGATAGCAACACCACCGCAGTGGCCGCAGTGTTCGTGGTGGTGGGAGCTCTGGCCAGCGGGATTTTGGTCTTGGCATTACTTCGGCGCAGGAGATTAAGAGGTCCACCCCTTTCACATCCAGTGGAGACAGAGGAACCATTAGAAAGGCTCAGAGTCGAAGAGATGGCAGTGAGGGCAGTGCTGTCAGTGTACGTTCTGTGTGCAGTTGCGTCTGCATTTCTAGTGTctcagtctcctctgttcctggAAGCgaagctgggagacactgtgaaGATCACTTGCTCCACAACCCTGAAGAGTCCTGATGGCATGTTTTTGAGAAGGATATTCTATAAAGAAGGTCAGGTGCTTTACGTCGCCAATAATGACATGAAATTGACACCAGCGGAAGACTACAAAGAGCGAGTGAAGGTTACCGGGAAATTGAACAATATCACCCTCACATTCAGCGCATTGAGGGAGGACGACTCTGGGGTGTACTTCTGTCACTACAGACACCTCAATATGGAAACGGCACAAATGGAGGAATTTAAAAGCAGCTGCACTCTGATTCTGGTCAAAGGTGCTGTGCAGACTGGGCCGTGTGAGCAGAATAGAGCCCAGCATCTGAGTCCCACCCTGACGCTCATCACAGCTCTGTCCGCTGCCTTCATGCTCCTGCTCCATCTCTATCTGTCTGGTCCCAAGGTTGACGTCGCTCCAGGTGAACAATGCACACAAAGCAAGCCCCTGGAGTTGACCCCCACCCTGATGCTCATCACCGCCCTGTCAGCAGCCTCCGTGTTCCTGCTGTGTGTCATGGCCATCATTATCTGGCAGTTCCCCAAGATTAAGAAATTCTTTGCAAAGCGCCAGTCTCCAAGGCAGAGGAAATCCCACGAAATGGTGTATGAGGACATGCGGCAACACAAATAACAGGATTTTGCACCAGCGAGTGTGTGGGCGTGAACAAACACGGCAGAAGActgtaaaaataacacacagtgaTGGCAAGCTATACTGGTGCTATACTGTACAGTGAAAAAGCTTGAGCGATGGTTTAGAGTCATTATGGTACTTCAGACAAACTGTTCATGAAATCCTTCTATGTCTGTACATACAAATaacattcatataatttatGGTGTTTGACAGAAATATTGAAgtatatggttttatttttctcttcaaatGAGTAACAGGAATTTCCTTGAGTCTTTCTTCTCACACATGGCTGAAATGATGAAGATCAAGGTACTGCCTCTGCACTCTGCCCTCCTCCAAAGGCAAACAGCGGGCCCTCAGACAGACAGTAGCAGGGCCCCCAGTATGCTGTTACAAATACTTACAAATAAGTCACCACCTTTAGCACAGGTATGTCACAGTGAGCGGGAAGAGATAATGAGTCACAGTCTAATACTGGAGGCTTTATGTTTTTCACATTGGTGTGGTTTTCTGTGCTGGCTGTCTATTAGACCCGTCTACTGACCGAGTTGTGGTTGTACTGCTTTGTGTGTTGTATAGAAGTTGCACTGACTTGCTTTGTGTCGTATTCCTTGCTTTTTGAGAGGCCCACTAGGCACtttttctgatccggatcaaatgcatcggtacatTTGTGGATCAGTGGTATCGCGTCTACACTGCCATCAACTGTCAGCCGCTGCAAGGGTCTTCGCATGCACACTAGCACGGATGTCCAAACTCACTGATATGAATTagtctaacaagtaaaaccaactcACTTGACTATTTTTTCGAGaccgaagcattttaaatataaatacatttatatatttatattctaacATGAAATGACAAAGCATTTAGTGctatttttaacaatgttttatttataataagggAAGTAGGTAAGTGTGCTTTTATCTGCTCCACTAATGCAAAGGCTGCTTGTCTGCTGTCAGGACCATGTGCTACAAATGCTTTTGAttcggatcagaaatggcagtgtaaacgcaccTATGGTTCTGGAACGCcacattcctttttttgtagatttgttttgaaGCTCACATTTACAGACTGAAGACAAAGTGCAGGGCAACGATGTTTGACCGGTGTGGGGCATTTAGGAGGTATAAGAAGATTcttataaaatcacatttacttGACTAACCTCTGTGCAGATGAGAAAACCTAACTCTTTTAGGCTTCAATTATGAGGTTTGaactatttatgtatataaagctgattcattttcatacctttttattttggttataaataaatgtgtgtacatataatGATTTCCTGTTTATGTTACAATATTGATCCaacc

Function

GO:

id name namespace
GO:0002376 immune system process biological_process

KEGG:

id description
ko04612 Antigen processing and presentation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54325 lncRNA upstream 163984 28068646 ~ 28072799 (+) True AMCG00013317
TU54159 lncRNA upstream 818996 27270028 ~ 27417787 (+) True G43438
TU54122 lncRNA upstream 1226132 27010372 ~ 27010651 (+) True G43402
TU54034 lncRNA upstream 1313644 26892614 ~ 26923139 (+) False AMCG00013281
TU54444 lncRNA downstream 135282 28389689 ~ 28389960 (+) True G43673
TU54481 lncRNA downstream 426403 28680810 ~ 28682174 (+) True AMCG00013336
TU54482 lncRNA downstream 426403 28680810 ~ 28682174 (+) False AMCG00013336
TU54489 lncRNA downstream 483716 28738123 ~ 28738753 (+) True G43712
TU54625 lncRNA downstream 895571 29149978 ~ 29151334 (+) True G43810
AMCG00013324 mRNA upstream 2301 28227569 ~ 28234482 (+) True AMCG00013324
AMCG00013320 mRNA upstream 12347 28219066 ~ 28224436 (+) True AMCG00013320
AMCG00013322 mRNA upstream 28188 28199809 ~ 28208595 (+) True AMCG00013322
AMCG00013321 mRNA upstream 39840 28190435 ~ 28196943 (+) True AMCG00013321
AMCG00013315 mRNA upstream 56982 28172751 ~ 28179801 (+) True AMCG00013315
AMCG00013328 mRNA downstream 48946 28303353 ~ 28305608 (+) True AMCG00013328
AMCG00013327 mRNA downstream 68502 28322909 ~ 28343487 (+) True AMCG00013327
AMCG00013329 mRNA downstream 209955 28464362 ~ 28483978 (+) True AMCG00013329
AMCG00013330 mRNA downstream 311691 28566098 ~ 28582254 (+) True AMCG00013330
AMCG00013335 mRNA downstream 345496 28599903 ~ 28606883 (+) True AMCG00013335
TU54319 other upstream 300845 27934074 ~ 27935938 (+) False AMCG00013310
TU54201 other upstream 645965 27589139 ~ 27590818 (+) True G43476
TU54169 other upstream 821497 27385665 ~ 27415286 (+) True AMCG00013298
TU54155 other upstream 1078062 27158302 ~ 27158721 (+) True G43434
TU54005 other upstream 1425168 26808164 ~ 26811615 (+) True G43309
TU54454 other downstream 229866 28484273 ~ 28488783 (+) True G43682
TU54615 other downstream 849882 29104289 ~ 29104577 (+) True G43802
TU54772 other downstream 1386216 29640623 ~ 29658948 (+) False AMCG00013364
TU54850 other downstream 1666660 29921067 ~ 29928697 (+) False AMCG00013375
TU55045 other downstream 1964503 30218910 ~ 30222209 (+) False AMCG00013396

Expression Profile