RNA id: AMCG00013326


Basic Information

Item Value
RNA id AMCG00013326
length 2078
RNA type mRNA
GC content 0.56
exon number 19
gene id AMCG00013326
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 28210403 ~ 28218058 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCCGGGGTCCTTCCTGCTCAACTCCTGTGGCGCTGTATTCGTTGTATGCTGTAATTGCCGAGTCTGGTTTTCCTTAGGAAATCGTTAgttttttaaggtttatttgACTCCCCCCCGGAATGGAGGAGGTTGACGTCGAGCCAACCACGACGGTCATCCCTGGCGTTGATTTCAAGCAGAAGCACCTGGGGTTTGAATGGGGACCCGGAGATATCATCGTATATGAAACTCAATACAAGATTGCAGGAGCTGCTCCTGTGGGGCCCGGCTGCCTCTCCATCCATGTGGTCAGGAAGGATGAAGACATCTACTCCCCAATCCTGCGCAAGCTCTTCAACGAGTCCCATCATATCTTCGTGGGGCTCCAGAAGACCAAGGATGAGGTCTCCAACAAGGCTAAAAAGCCGCAGTTTGTCAGCATCAGTAAGAACTACAGATCTGTGATACGAGCTGCAGTGGAAGAACTTAATCAAATTGCAGTTTCCACACGTGATTCAGCTTTAGAAACACAGTATGGCAACCAGGTGTCCATCCTGCTGGCGGTGGAGCTGATCTGGAACCTGTGTGAGGTGCTGTTCATCGAGGCAGCTCCGGCCGGCACTCTACTGCTGCACCTGTTGGACTGGGTGCGGCTGCACAAAGCGGACGTGGACGAACGGGCCCGGGAGGTCCTGCAGAACGAGAACCCTGCGCAGCACCAGGCCTACTGGAACGTGGTGATCAGCTATGTGCTGCAGGGCCGGATGGACGAGGCCAGGCAGATCCTGGGCAAACGGGCGACCCAGCAGCCTGCGGCACGAGCCATGTTCAAGCTGCTGGATAACCTCATGATGAAGATGCCTGTGTACAATCCAGGCGGCACCCAGACTTTGACAGAGTTTGATGTGAAGTGGCGCCACTGGCACGAGGAGTGTGAGCGCTGCCTGCAGGACAACTCCTTTGCCAGCAACCCCCACCTGGAAGTCATTTGCAAGATTCTTCTGGGTGATGAAGACACTCTACTGGACCAGAAGGAGCTGCTGAGCACCTGGTACCACTTCTTGGTGACCCGGCTCCTGTACTCCCACCCCACCGTGAAGCCCACCGAGATGCACTACTATGCCCAGTCCAGCATGGACATGTTCCTGGATTCCCGCAGCGCCCCGGAGCCGCTGGACAGCATCCTACTGGCCGCCTTCGAGTTTGACATCCACCAGGTCATTAAGGACTGCAGCATTGCTCTGAATAATTGGTGGTTTGTCGCTCATCTGACAGACCTGATGGATCACTGCAAGCTCTTGCAGTCGCACAACCTTCActttGGCTCCAATCTGAGAGAGTTTCTCCTCTTGGAATATGCATCTGGTCTCTTCACCCATCACAGCCTGTGGCAGCTGGCCGTGGATTATTTTGACCATTGTCCGGAGTTCGGCAGGGTCTATCTGGAGCTGCAGATTGAGCGGGTGCCTCTGGACACGGAGCGCAAGGCCCTGAAGGTGCTGCGGATCTGCGAGCAGAGGCAGATGCTAGAGCAAGTGCGCAGCATCTGCAAGATCATGGCGAAGAAAGCACTGCGGAACAACCGGCTGGGCTCGGCGCTCTCCTGGAGCATCAGGGCCAAAGACGCCGCCTTCGCCACCCTCATCTCCGAGAGGTTCCTGCAGGATTACTGTGCCCGGGGCACCTTCTCAGACCTGGACTTGATTGATAACCTGGGGCCAGCCATGCTGCTCAGTGACCGGCTCACCTTCCTGGGGAAGTACCGCGAGTTCCACAAGATGTACGGTGAGAAGAAGTTCGCCGAGGCGGCCAAGCTCCTGCTCTCGCTCATGACTGCCAAGATCGCCCCCAGGAGCTTCTGGATGACACTGCTGACTGACGCCCTGCCGCTGCTCGAACAGAAACAGGTTATATTTTCTGTGGAGCAAACCTACGAGCTGATGCACTGTCTGGAGGAACTGACGACAGGCAAGACTCTGCCCTCCGACAGACACCTGGTTCAGGATGAAGACATCGAAGCCACGAAGATCGAGCTCCTGCGCCTGGCTTTGGCGCGGAACCTGGCAGCTGCGATTGTGAACGAGGGCACCGTGGACACG

Function

GO: NA

KEGG:

id description
K14304 NUP85; nuclear pore complex protein Nup85

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54342 lncRNA downstream 137616 28070138 ~ 28072787 (-) False G43594
TU54338 lncRNA downstream 147950 28062249 ~ 28062453 (-) True G43593
TU54337 lncRNA downstream 149234 28060844 ~ 28061169 (-) True G43592
TU54335 lncRNA downstream 244170 27966012 ~ 27966233 (-) True G43590
TU54249 lncRNA downstream 493360 27714039 ~ 27717043 (-) True G43518
TU54394 lncRNA upstream 11352 28229410 ~ 28234706 (-) True G43626
TU54439 lncRNA upstream 125219 28343277 ~ 28347474 (-) True G43670
TU54457 lncRNA upstream 252276 28470334 ~ 28470537 (-) True G43685
TU54458 lncRNA upstream 257050 28475108 ~ 28475326 (-) True G43686
TU54459 lncRNA upstream 257398 28475456 ~ 28476100 (-) True G43687
AMCG00013325 mRNA downstream 10610 28196957 ~ 28199793 (-) True AMCG00013325
AMCG00013319 mRNA downstream 80271 28128668 ~ 28130132 (-) True AMCG00013319
AMCG00013318 mRNA downstream 131701 28074541 ~ 28078702 (-) True AMCG00013318
AMCG00013313 mRNA downstream 283076 27917922 ~ 27927327 (-) True AMCG00013313
AMCG00013314 mRNA downstream 309514 27892338 ~ 27900889 (-) True AMCG00013314
AMCG00013331 mRNA upstream 274888 28492946 ~ 28495999 (-) True AMCG00013331
AMCG00013332 mRNA upstream 283964 28502022 ~ 28521437 (-) True AMCG00013332
AMCG00013339 mRNA upstream 553875 28771933 ~ 28777474 (-) True AMCG00013339
AMCG00013348 mRNA upstream 756632 28974690 ~ 28989005 (-) True AMCG00013348
AMCG00013349 mRNA upstream 773379 28991437 ~ 28996380 (-) True AMCG00013349
TU54344 other downstream 137616 28068213 ~ 28072787 (-) True G43594
TU54196 other downstream 641252 27568764 ~ 27569151 (-) True G43473
TU54172 other downstream 917330 27273229 ~ 27293073 (-) True AMCG00013295
TU53964 other downstream 1653079 26556354 ~ 26557324 (-) True AMCG00013264
TU53711 other downstream 2693440 25516080 ~ 25516963 (-) True G43070
TU54456 other upstream 249254 28467312 ~ 28467906 (-) True G43684
TU54700 other upstream 1035338 29253396 ~ 29254316 (-) True G43869
TU54894 other upstream 1788706 30006764 ~ 30010700 (-) False G44034
TU54953 other upstream 1862978 30081036 ~ 30083345 (-) False AMCG00013386
TU54954 other upstream 1862978 30081036 ~ 30083345 (-) True AMCG00013386

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01077459_00000639_00001596.mRNA True 582 mRNA 0.57 5 CI01077459 639 ~ 1596 (+)