RNA id: AMCG00013327


Basic Information

Item Value
RNA id AMCG00013327
length 981
RNA type mRNA
GC content 0.55
exon number 10
gene id AMCG00013327
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 28322909 ~ 28343487 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTGCAGCGGAGATGCACAGGAATTTGGCGGTGGGAGCCCAGAGTTCACATTCCACTCGAACCCGAAGCGCTGCGCAGTTGGCAGCCTGGCTTGGAGCTCGAGCGCAGACAGCGAGAGCTTGGTGGCAGCCTTGTGGCCGCCTGGTGCAGGAAGGTCAGAGGTCATTCCCAGCTACACAAGCACCATGGCAGACCCCTCCAGAGATCCTGGCGCCAGGCCGCCCCCCCCAGTGCGCAGTGACAAGCCCGGGGCTGACTTCAGCTATGTGGGCATCGATGCCATCCTGGAGCAGATGAGAAGGAAGGCGATGAAGCAGGGCTTTGAGCTCAACATCATGGttgtgggtgaGTCAGAGCGGGTTGGGCAAATCCACGCTGATGAACACCCTCTTCAAGTCCAAGACATCGAGGAGAAGGGCGTGCGGATGAAGCTGACGGTCATCGACACTCCCGGCTTTGGGGACCAGATCAATAATGAGAACTGCCTTCGACCTCTGGACGTGGAGTTCATGAGACGTCTCAGTAAAGTGGTCAACATCGTGCCCGTCATCGCGAAAGCTGACACACTAACGCTAGAAGAGAGAGACTTCTTCAAACAAAAGATCAGGGAAGAGCTGCGGGCCAATGGCATCGATGTGTATCCTCAGAAGGAGTTTGACGAGGACGCAGAGGACAGGATGATCAACGAGAAGATACGGGAGATGATCCCTTTCGCTGTGGTAGGGAGTGACCAGGAGTACCAAGTGAACGGCAGGAGGCTTCTGGGAAGGAAGACAAAATGGGGCACCATAGAAGTTGAGAACATTGCACACTGTGAGTTTGCCTACTTGCGAGACCTGCTCATAAGAACACATATGCAGAACATCAAGGATATCACCAGCAGCATCCTGTATGAGGCGTACCGCGTCCGGAGGCTGAACGAGAGCAACATGCACGCAAACGGCGTCTCCGACCATGACGTCACCTCCAACGAGATGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54325 lncRNA upstream 250110 28068646 ~ 28072799 (+) True AMCG00013317
TU54159 lncRNA upstream 905122 27270028 ~ 27417787 (+) True G43438
TU54122 lncRNA upstream 1312258 27010372 ~ 27010651 (+) True G43402
TU54034 lncRNA upstream 1399770 26892614 ~ 26923139 (+) False AMCG00013281
TU54444 lncRNA downstream 46202 28389689 ~ 28389960 (+) True G43673
TU54481 lncRNA downstream 337323 28680810 ~ 28682174 (+) True AMCG00013336
TU54482 lncRNA downstream 337323 28680810 ~ 28682174 (+) False AMCG00013336
TU54489 lncRNA downstream 394636 28738123 ~ 28738753 (+) True G43712
TU54625 lncRNA downstream 806491 29149978 ~ 29151334 (+) True G43810
AMCG00013328 mRNA upstream 17301 28303353 ~ 28305608 (+) True AMCG00013328
AMCG00013323 mRNA upstream 68502 28236783 ~ 28254407 (+) True AMCG00013323
AMCG00013324 mRNA upstream 88427 28227569 ~ 28234482 (+) True AMCG00013324
AMCG00013320 mRNA upstream 98473 28219066 ~ 28224436 (+) True AMCG00013320
AMCG00013322 mRNA upstream 114314 28199809 ~ 28208595 (+) True AMCG00013322
AMCG00013329 mRNA downstream 120875 28464362 ~ 28483978 (+) True AMCG00013329
AMCG00013330 mRNA downstream 222611 28566098 ~ 28582254 (+) True AMCG00013330
AMCG00013335 mRNA downstream 256416 28599903 ~ 28606883 (+) True AMCG00013335
AMCG00013334 mRNA downstream 266618 28610105 ~ 28610395 (+) True AMCG00013334
AMCG00013333 mRNA downstream 267816 28611303 ~ 28623511 (+) True AMCG00013333
TU54319 other upstream 386971 27934074 ~ 27935938 (+) False AMCG00013310
TU54201 other upstream 732091 27589139 ~ 27590818 (+) True G43476
TU54169 other upstream 907623 27385665 ~ 27415286 (+) True AMCG00013298
TU54155 other upstream 1164188 27158302 ~ 27158721 (+) True G43434
TU54005 other upstream 1511294 26808164 ~ 26811615 (+) True G43309
TU54454 other downstream 140786 28484273 ~ 28488783 (+) True G43682
TU54615 other downstream 760802 29104289 ~ 29104577 (+) True G43802
TU54772 other downstream 1297136 29640623 ~ 29658948 (+) False AMCG00013364
TU54850 other downstream 1577580 29921067 ~ 29928697 (+) False AMCG00013375
TU55045 other downstream 1875423 30218910 ~ 30222209 (+) False AMCG00013396

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00051771 False 638 lncRNA 0.44 3 NC_007114.7 34470154 ~ 34477363 (-)
grasscarp (Ctenopharyngodon idella) CI01000069_05227862_05278522.mRNA True 1704 mRNA 0.51 10 CI01000069 5227862 ~ 5278522 (-)