RNA id: AMCG00013328



Basic Information


Item Value
RNA id AMCG00013328
length 900
RNA type mRNA
GC content 0.63
exon number 2
gene id AMCG00013328
representative True

Chromosome Information


Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 28303353 ~ 28305608 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGGGACGGGCGGTGATGAGAGAGGGTCGGGCTGGGAGCCCCTCACAGTCCTGCTGGAGAGTCACTCGTGTTGGCAGCGCTCTGTGGATGTGATCCTGATGCTGGACCGCGCCAGGAATCAGCTCAGCATCTTAAGGACGCCTAACCCTCACCTCCGGTCGGCTGTGTCTTCCTCTACCCAGCGCTTCCAGGAGCTGGGCGCCCGCAACTCGGACTTCTCCCAGAAGGGCTCGGAACTGTCCAACCAACGCTCCCCCAAGACCAGCCTGCGGCGCGTGGAGCTGCCCGGCCCGCGCGCTCCCGAACCTGTGTCCCGGAGGACGGAGATCTCCATCGACATCTCCTCCAAGCAGGTGGACAGCTCCCCCAGTCCTGGCATCTCACGGTTCGGGCTGAAGAGACCTGAGGTCGTGGGGCACAAGCCACCGGAGCTGGCGCACAGACGGGCAGAACTCAACCTCGGCAAGGTGCACGAGCCCCCACCTCTCAGGAAGGTCGAAACGCcttccacctcctcctccgcctcctcctcctcctcttcctccaggaTCCCTGACCCTCCCCAGAGGAAGGCCGAGCTGCCCAGTCACACCACGTCTGTGGAAACTCCACCAAAACGCAGTGAGGCTCCGCTCAGCAAGCCCCCCGAGACAGTGGCTCCGACTAGGGCGTCTGAAAACAACTTCTCAGCGCCTGCCAGTGCCCCGGCCTCCCACTCGGAGCCCAAGACACAGCCCGCTGTCACCGAGGTCTACATCAGGAGCCCTGACGGTGAGTACAGAGGTGGTGTAGCCTCCTCTCCCTGGCTGATACCCCCACTTAGACATCTCCACCGCCTGAGCACTTTGCAGCATTCCTTGTGTTCGTCTGATTGCGATCAGCTCAACAGCATTGACTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU54325 lncRNA upstream 230554 28068646 ~ 28072799 (+) True AMCG00013317
TU54159 lncRNA upstream 885566 27270028 ~ 27417787 (+) True G43438
TU54122 lncRNA upstream 1292702 27010372 ~ 27010651 (+) True G43402
TU54034 lncRNA upstream 1380214 26892614 ~ 26923139 (+) False AMCG00013281
TU54444 lncRNA downstream 84081 28389689 ~ 28389960 (+) True G43673
TU54481 lncRNA downstream 375202 28680810 ~ 28682174 (+) True AMCG00013336
TU54482 lncRNA downstream 375202 28680810 ~ 28682174 (+) False AMCG00013336
TU54489 lncRNA downstream 432515 28738123 ~ 28738753 (+) True G43712
TU54625 lncRNA downstream 844370 29149978 ~ 29151334 (+) True G43810
AMCG00013323 mRNA upstream 48946 28236783 ~ 28254407 (+) True AMCG00013323
AMCG00013324 mRNA upstream 68871 28227569 ~ 28234482 (+) True AMCG00013324
AMCG00013320 mRNA upstream 78917 28219066 ~ 28224436 (+) True AMCG00013320
AMCG00013322 mRNA upstream 94758 28199809 ~ 28208595 (+) True AMCG00013322
AMCG00013321 mRNA upstream 106410 28190435 ~ 28196943 (+) True AMCG00013321
AMCG00013327 mRNA downstream 17301 28322909 ~ 28343487 (+) True AMCG00013327
AMCG00013329 mRNA downstream 158754 28464362 ~ 28483978 (+) True AMCG00013329
AMCG00013330 mRNA downstream 260490 28566098 ~ 28582254 (+) True AMCG00013330
AMCG00013335 mRNA downstream 294295 28599903 ~ 28606883 (+) True AMCG00013335
AMCG00013334 mRNA downstream 304497 28610105 ~ 28610395 (+) True AMCG00013334
TU54319 other upstream 367415 27934074 ~ 27935938 (+) False AMCG00013310
TU54201 other upstream 712535 27589139 ~ 27590818 (+) True G43476
TU54169 other upstream 888067 27385665 ~ 27415286 (+) True AMCG00013298
TU54155 other upstream 1144632 27158302 ~ 27158721 (+) True G43434
TU54005 other upstream 1491738 26808164 ~ 26811615 (+) True G43309
TU54454 other downstream 178665 28484273 ~ 28488783 (+) True G43682
TU54615 other downstream 798681 29104289 ~ 29104577 (+) True G43802
TU54772 other downstream 1335015 29640623 ~ 29658948 (+) False AMCG00013364
TU54850 other downstream 1615459 29921067 ~ 29928697 (+) False AMCG00013375
TU55045 other downstream 1913302 30218910 ~ 30222209 (+) False AMCG00013396

Expression Profile