RNA id: AMCG00013329


Basic Information

Item Value
RNA id AMCG00013329
length 5507
RNA type mRNA
GC content 0.64
exon number 20
gene id AMCG00013329
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 28464362 ~ 28483978 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGACTAATGGACTTCTGCAGGCGGTGGGATGGGGCTGGAATGCACTGGCCTCCCCTGGACCTGCACTGATCTCCACCGTGCAGGTGCACTGTAGGAACCCGTTAAAGCCGCCCCACCAGAGTGGCCTGGGAACCCAGTATGAGAATCCCCACTGGGGACCCCAGCCCACCAGTCGGAGTGAATCGAACAGCAGCAGCTGGGATCAAGTGATCATCGACGAGAGCGACACCGAGGCGTGGCCTTCCATTTCCCGCAGCGACAGCCACGCCCCCCCAGAATGCACCACGGACACTGACTGTGCCACCGagatcagcagcagcagcagtagcagcatgAGCATGGCCACGGGGGGCCAGCAGGGCCACTTCCAGGGCCACCACCCCAGCAGCAAAACCAGCGCCAACCACTCGGGAAACATGGTTTCCAACCAGGGCGGGGCCAGCCGTGGCTGGGGCTCCGGCCCCACCCACTGCCCCTCTGCCATCGGAGGAGAGGGGAAGACCGACAGCATGTCAGTGGGAGGGAGGGGCCAGCCCTGCTGGAGCACCCCCAACTTTAACTTGAACCTGAACCCTAACGCCAACCCCGCTGCCTGGCCTGTGTTGGGCCACGAGGGGACTGGCATGGGGGGCGGGGGCCCAGGGGGTAATaaccctcctcctccccccaacCTCTGCACCCCAGCGGGTGCCCCGCCGGCccagggcagcagcagcggtGGCAATATGGGCAGCGCCAATGGAAACCTTGCAGGGGGCGGGGGCAGCAGCGCCTGGGGGGGTCTGCTCCCCCCCGACGCCACCGAGTCCCGCCCCTCCCCGTCCACGAATGTGTCTTTCAGCGTCGAACCTCAGAACCTTAACACTGACGGACCAAATAACACTAAACAGGAGCCCCTCAGCCCCATCCATGGCCTCCCCAGCTGGGGTGCTGTCTCTGTCGGCATGGGGTCCCTCGTGCAGCCCCCCACTGGAGCCTCGCAGGTCAACGGGGAGGGGGGCTCGGTTTGGGGCAGCGGAGATGCCAAGTCAGGGTGCTCCAAGGATTCCGCCTGGGATTCGGGGCCACCCAGCAGCCCGGGCCTCCTCTCTGCCTGGGGCCGCCCCGGGAACGGAGGCGGCGGTGGGGGGGGTGCGGGGGCCTGGGTACGGGCCGGTGGTGGAGATTGGGGCAAGCATTCCAGCGAGGCCAAAGGGTGGGATGCGGCGGGCACCCCCCCCCAGGAGCAGCTTCCCTCCTGGACTCGTGCAACCAACGCCCCAGCCAGTGAGGGCAGCAACGACAGTCTGGAGGGGCGGTCCCGCCGGAGGGAGCGGTCGTCCAGCGAGCATGAAGCGGCCCCTCCCCTGCCCAGGCAAGACCTGGACCCCCGAGTCCTGTGCAACACTGGCTGGGGCCAGACCCCGGTCCGACAGCACACCATGTGGGAGATCGAAGAGGTTGCACGGGCCGACCGCAAGAACGACACCGGCACCGAAGCCTGGAGCTCGACCTCCGCCTCGTCCTCCTCGACTGGAGCCCAGCTGGCCCCTGGAGGTGCCAACCCAAACCCCAGCGCTGCTCAGATGTCAAACTCAGGTGGCAAAGGCGAAGGGTCCAATACCTCGGCGGCTCCGGGCTGGGGGAACCCCACCCCCAGCCACATCACACCAGCGCCGGGCCAGTCCAGCTCCGGCTGGGGTGAGCAGCCCAGCGTCAAGAAAGCCCCTAACGGGTCTGGAGGCTGGGGAGATGCCCCCGCCGGCGGCAACAATGCCAACATCCCCAAGACTGGGCTGTCCTGGGGGTCTGAGGAGAAGTCCCCCAGCTGGGACGAGCCCCCTGCCAAGCCCAAATCTCAGAACTGGGGAGAGGCGCCCAAACCTTCCCACGGTGGCTGGGGCGGGAGTGGAGGAGCTGGGGGTGGCGGAGCTGGAGGAGACTGGGGGGGGGAGCACGGTGAAGGGAAGAAGAACGGCCCCACTACCACTCCCTGGGAAGGGGAAGGAGGGTGGAAGGAGAACCAGCGCAACTGGGGGAAGCCCAACCccggggtggggggtggctgGGGGGAGGCACAGCGACCCAGTGCTCCGTtggggcaggggtgggggggcaagcCCCAGGATGCCAACACCGCTAATAGCAGCGGCACAGGAGGTGGCGTGGGAAACTGGGGCGGCGCTGGCTCGGTCAAGCAGAGTGGCTCGggctggggagggggtggtggggcaggaggaggaggagttggAGGAGGGGGTAGTGGGGGAGGAGTGgtaggaggagggggaggaggaccTGGAGGACCTGGAGGAGCAGGAGGGCCAGTAAAACAGGAGCCTGGAGGGGAGCCCACCGGGTGGGAAGAGCCCTCCCCTCCCTCGATCCGGCGCAAGATGGAGATTGACGACGGTACCTCAGCTTGGGGTGACCCGAGCTCCTGCAACAAGACTGTCAACATGTGGGACAGGAACAACCCTGTGGTCCAGAGCAGCCCGGCAcccaacaacagcagcagcagcagcaacaacaacccCGCTGCCcccagcaacaacaacagcaaccaccaccaccatcaccaccaccaccatcaccaccacccgCACCACGGCCAGCCTCCAGGCCAGAACCATGGCCACACGGCCGCCAACAATGCCAACAACAACAGCGCGTCCGAGGCGGCAGCACCTCACCAAACAAGTGCCCCGCAGAACCGGTCCCCCCTCGTCGGGCCAGCTTGGGGAGAGCTGCCCAGCGTCCACTCCAAGCCTGAGCCATCGTGGGGCGAGCCGGCCTCTCCCGCCCCCAACGTGGACAACGGCACCTCTGCCTGGGGAAAGCCCCCGGGCAGCTGCGGGGGCTGGGGGGACAACTCATCTGATCCCGCAGGGCCCTACGGCAGGGGCAATGGTCCTCCAGGAACTGCCCCCTGCAAGCCAGCCTCCAAATCTATGCAAGATGGTTGGGGAGGCAGTGCGGACGAGATGAGCATGTCTGCAGGGCagtgggagcaggaggagggggACATGTGGAACAGCGCCGCCTCGCAGGAGAGCAACTCGTCCTGCAACTCCTGGGGCAACGCGCCCAAGAAGGGACAGCAAAAGACTATGAAGGTGCCCAGCAAGCAGGACGATGCCTGGATCATGAGCCGTCTGATCAAACAGCTCACCGATATGGGCTTTCCGcgAGATCCTGCTGAGGAGGCTCTGAAGAGCAACAACATGAACCTGGACCAGGCGATGAGCGCCCTGTTGGAAAAGAAGACAGAACTGGACAAGCGGGGGATGGGAATTTCCGACTATAACAACGGCCTGGTCTCCAAACCGCTGGGCTGTCGACCCCCGGCAATCTCCAAAGAGTCTTCCTCAGACCGCCCCTCCTACCTGGACAAGGACGGCGGCCTGGTGGAAGACGCCCCAACCTCACCGTTTTTGCCTTCTCCCAGCCTGAAGCTCCCCCTGTCCAGCAGTGCCCTCCCCAACCAGGCCCTGGGGGGGGTCTCTTCGGGGCTGGCCATGCAAAACTTGAACTCCAACAGGCAGATGCAGAGCGCAATGTTCGGCAGTAGCGGAGCAGCACAAGCCAGGGCCGGGCAGCAGCAGCCACCTCCCCCCCAGCCATCAGTGCCGCCTCTCAACTCCTCCCAGCCTAGTCTTCGTGCTCAAGTGCCTCAGTTTCTCTCCCCTCAGGTTCAAGCACAGCTCTTGCAGTTTGCAGCAAAAAACATTGGTCTGAACCCTGCACTTTTAACCTCACCAATAAACCCTCAACACATGACCCTGTTGAACCAACTCTACCAACTGCAACTGGCGTACCAGCGTTTACAACTCCAGCAGCAGATGTTGCAAACTCAGCGCAACGTTTCTGGCCCCATCAGACAACAAGAGCAGCAAGTTGCACGTACAATCAATAACATGCAGCAGCAAATCCAACAGCACCAGCGCCAGCTGGCCCAGGCCCTGCTtatgaagcagcagcagccgcctCCTCACCCCAGCCTGCACCCCGGCGCCGGCAAATCAGCCCTGGACAGctacccaccccacccccaggcCCAAGGCCTCAGTGACCTGCAGACCAAAGAGCAGCAGTCTTCTCCCAACTCCTACTCTCCGTACCCTCTCTCTGGACTGAATCCAAACATGAATGTAAACAGTATGGATGTGAGTGGTGGTCTGTCCATGAAGGACACGTCTCAGTCTCAGTCCCGCCTGCCGCAGTGGACACACCCCAACTCCATGGAGAATCTCTCGGGCAACTCCTCGCCACTGGAAGCCAACCTCAGCAAGCACGGCGTTTTCTCGGCAGGTTCCAGCCTTGGCCCCCCGGGGAAGCCCTCCATGGAGGACTCCTACAGCCACTACAATCTGATCTCCAGCTCCGATTCTCCCGCCAGCCCGCTTGTGGCTCCGGACAGCTGGGCCCAAGGCAAATCCTCCAACGACAAGATCTCCAACGGCACCAACATCAACTGGCCACCAGAGTTTTGCCCTGGAGTGCCCTGGAAAGGACTGCAAAACATCGACCCAGAAACGGATCCCAACGTGACTCCGGGAAGTGTCCCCAGCGGCCCCACCATCAACACCAACATCCAGGACGTGAACCGCTATCTGCTCAGAGACCGCAGTGGAGGCTCATCCCCAACGTCTTCTCAGAACGGCGCGCTGCCTCCCTCCGACGCCTGGCCAGTCAGTGCCTACACTAGCTCTTTCAATATGCCATCATCAGCGACTAATACTGCAGGTAAACTCTCGGACATGAAGTCCACCTGGTCTCCCGGCCCCATCTCCCACACCCAGGCCTCGCTATCTCACGAGCTGTGGAAAGTGCCGCAAGGCCCCCGAAACACTACGGCTCCCACCCGGCCCCCTCCTGGCCTTACCAACACCAAGCCGTCCTCGACGTGGGGCGGCAGCGCGCTGGGCCTGGTGCCCGGCTGGAGCAGCTCTTACTCGGGTACCACCTGGAGCACGGACAGCTCGGCCAGGACGAGCAGCTGGCTGGTGCTGAGGAACCTCACCCCCCAGATCGACGGTTCGACGCTGCGGACGCTGTGCATGCAGCACGGGCCTCTCATTACATTCCACCTGAACCTGACCCAAGGCAATGCCGTCGTACGCTACAGCTCCAAGGAGGAGGCGGCCAAAGCCCAGAAGTCCTTGCACATGTGTGTGCTGGGTAACACGACCATCCTCGCCGAGTTTGCCGGGGAGGAGGAAGTGAACCGATTCTTTGCACAAGGTCAGTCTCTGACGCCCACCACCAGCTGGCAGGCCAACCCAGGCACCAATCAGACCCggctggggggggcgggggcatCGCACGGCATGGGCCACTGGAACAGCAGCGGGCTGGGGGGCGCCAAGGCCGGCAGCGACCTGCTGTGGGGGGGGGTCCCGCAGTACTCGAGCTTGTGGGGCCCGCCCAGTGGAGAGGACGCCCGGGTCATCGGGAGCCCCACCCCCATCAACACGCTGCTGCCTGGGGACCTGCTGAGCGGAGAGTCCATGTAGGATTACAA

Function

GO: NA

KEGG:

id description
K18412 TNRC6, GW182; trinucleotide repeat-containing gene 6 protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54444 lncRNA upstream 74402 28389689 ~ 28389960 (+) True G43673
TU54325 lncRNA upstream 391563 28068646 ~ 28072799 (+) True AMCG00013317
TU54159 lncRNA upstream 1046575 27270028 ~ 27417787 (+) True G43438
TU54122 lncRNA upstream 1453711 27010372 ~ 27010651 (+) True G43402
TU54034 lncRNA upstream 1541223 26892614 ~ 26923139 (+) False AMCG00013281
TU54481 lncRNA downstream 196832 28680810 ~ 28682174 (+) True AMCG00013336
TU54482 lncRNA downstream 196832 28680810 ~ 28682174 (+) False AMCG00013336
TU54489 lncRNA downstream 254145 28738123 ~ 28738753 (+) True G43712
TU54625 lncRNA downstream 666000 29149978 ~ 29151334 (+) True G43810
TU54612 lncRNA downstream 672721 29156699 ~ 29158493 (+) True G43799
AMCG00013327 mRNA upstream 120875 28322909 ~ 28343487 (+) True AMCG00013327
AMCG00013328 mRNA upstream 158754 28303353 ~ 28305608 (+) True AMCG00013328
AMCG00013323 mRNA upstream 209955 28236783 ~ 28254407 (+) True AMCG00013323
AMCG00013324 mRNA upstream 229880 28227569 ~ 28234482 (+) True AMCG00013324
AMCG00013320 mRNA upstream 239926 28219066 ~ 28224436 (+) True AMCG00013320
AMCG00013330 mRNA downstream 82120 28566098 ~ 28582254 (+) True AMCG00013330
AMCG00013335 mRNA downstream 115925 28599903 ~ 28606883 (+) True AMCG00013335
AMCG00013334 mRNA downstream 126127 28610105 ~ 28610395 (+) True AMCG00013334
AMCG00013333 mRNA downstream 127325 28611303 ~ 28623511 (+) True AMCG00013333
AMCG00013336 mRNA downstream 192564 28676542 ~ 28686138 (+) False AMCG00013336
TU54319 other upstream 528424 27934074 ~ 27935938 (+) False AMCG00013310
TU54201 other upstream 873544 27589139 ~ 27590818 (+) True G43476
TU54169 other upstream 1049076 27385665 ~ 27415286 (+) True AMCG00013298
TU54155 other upstream 1305641 27158302 ~ 27158721 (+) True G43434
TU54005 other upstream 1652747 26808164 ~ 26811615 (+) True G43309
TU54454 other downstream 295 28484273 ~ 28488783 (+) True G43682
TU54615 other downstream 620311 29104289 ~ 29104577 (+) True G43802
TU54772 other downstream 1156645 29640623 ~ 29658948 (+) False AMCG00013364
TU54850 other downstream 1437089 29921067 ~ 29928697 (+) False AMCG00013375
TU55045 other downstream 1734932 30218910 ~ 30222209 (+) False AMCG00013396

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00051765 False 4620 mRNA 0.55 26 NC_007114.7 34265049 ~ 34279109 (-)
grasscarp (Ctenopharyngodon idella) CI01000069_05100248_05121420.mRNA True 5856 mRNA 0.55 22 CI01000069 5100067 ~ 5121420 (-)