RNA id: AMCG00013330



Basic Information


Item Value
RNA id AMCG00013330
length 942
RNA type mRNA
GC content 0.63
exon number 7
gene id AMCG00013330
representative True

Chromosome Information


Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 28566098 ~ 28582254 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TTGGGAGGCCTGGAGTCCCGCGGGGTCCTGCGCAAGATCAGTGACATGCTGGAGGTCATCATGAAGAGGATAGACGTGCTGTCCAAGATGGGCAACACCAGCGACTCCCGGAGACTGGACGAGCTGAGCTCCGCCATCAACAGGTTCCAGCCGGCCGGCCTGGTGGAGCGGATCCAGGCCATCGCCCAGAACGTGTCCAACATGGCCGTGAAGGTGGAGCAGATCCTGCAGAACAGCCTGGCAGCCGGCCGAGTCAGAGACGCTGTGTCGGGACAGTGCGAGATTCCCAAGGACCCCAGGTTCCCAGACTGCCCGAGCAAAGTGGACTGGATGCGCGCTCGTTGGACCTCAGACCCGTGCTACGCCTTCTACGGGGTGGATGGCTCGGACTGCTCCTTCCTCATCTATCTCAGCGAGGTGGAGTGGTTCTGCCCCCCGCTGTCCTGGAGGAACCACACCAGCACCCCCACATACAAGCCCCGCGGCCGGAGGCAGGCAGCTTTCCGCACCGACATCACGGCCCTGCTGGACCAGGTGGGAACCGGGAAGGAGTCTCTGAGCTTCATGAAGAGGAGGATCCGCAGGCTGGCGTCCCAGTGGGGCACGGCTGCCCATCGGCTGGACCACAAACTCCGCAGGCCTTGGAGGGATCAGAAGAAGATCCTGGTCCATGTAGGTTTCCTGACCGAAGAGTCGGGTGACGTTTTCAGCCCCAAGGTGCTGAAGGGGGGGCCCCTGGGAGAAATGGTGCAGTGGGCGGATATCCTCACTGCTCTCTACGTCCTGGGACACAACCTGAAGATCTCCGTCTCGGTCAAGGAGCTGCAGGGGACGATGAGCCTGCGGGAGGGGAACGTGTGTCTCCATCACGTGTCCTCTGCCACCATCAGCCCCCTTTCCACGGGACCCCGAGCTCGACCTTGTCACTCATCCCTTCCCTAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU54444 lncRNA upstream 176138 28389689 ~ 28389960 (+) True G43673
TU54325 lncRNA upstream 493299 28068646 ~ 28072799 (+) True AMCG00013317
TU54159 lncRNA upstream 1148311 27270028 ~ 27417787 (+) True G43438
TU54122 lncRNA upstream 1555447 27010372 ~ 27010651 (+) True G43402
TU54035 lncRNA upstream 1661135 26897509 ~ 26904963 (+) True AMCG00013286
TU54481 lncRNA downstream 98556 28680810 ~ 28682174 (+) True AMCG00013336
TU54482 lncRNA downstream 98556 28680810 ~ 28682174 (+) False AMCG00013336
TU54489 lncRNA downstream 155869 28738123 ~ 28738753 (+) True G43712
TU54625 lncRNA downstream 567724 29149978 ~ 29151334 (+) True G43810
TU54612 lncRNA downstream 574445 29156699 ~ 29158493 (+) True G43799
AMCG00013329 mRNA upstream 82120 28464362 ~ 28483978 (+) True AMCG00013329
AMCG00013327 mRNA upstream 222611 28322909 ~ 28343487 (+) True AMCG00013327
AMCG00013328 mRNA upstream 260490 28303353 ~ 28305608 (+) True AMCG00013328
AMCG00013323 mRNA upstream 311691 28236783 ~ 28254407 (+) True AMCG00013323
AMCG00013324 mRNA upstream 331616 28227569 ~ 28234482 (+) True AMCG00013324
AMCG00013335 mRNA downstream 17649 28599903 ~ 28606883 (+) True AMCG00013335
AMCG00013334 mRNA downstream 27851 28610105 ~ 28610395 (+) True AMCG00013334
AMCG00013333 mRNA downstream 29049 28611303 ~ 28623511 (+) True AMCG00013333
AMCG00013336 mRNA downstream 94288 28676542 ~ 28686138 (+) False AMCG00013336
AMCG00013337 mRNA downstream 121793 28704047 ~ 28716412 (+) True AMCG00013337
TU54454 other upstream 77315 28484273 ~ 28488783 (+) True G43682
TU54319 other upstream 630160 27934074 ~ 27935938 (+) False AMCG00013310
TU54201 other upstream 975280 27589139 ~ 27590818 (+) True G43476
TU54169 other upstream 1150812 27385665 ~ 27415286 (+) True AMCG00013298
TU54155 other upstream 1407377 27158302 ~ 27158721 (+) True G43434
TU54615 other downstream 522035 29104289 ~ 29104577 (+) True G43802
TU54772 other downstream 1058369 29640623 ~ 29658948 (+) False AMCG00013364
TU54850 other downstream 1338813 29921067 ~ 29928697 (+) False AMCG00013375
TU55045 other downstream 1636656 30218910 ~ 30222209 (+) False AMCG00013396
TU55098 other downstream 1908573 30490827 ~ 30495656 (+) True AMCG00013416

Expression Profile