RNA id: AMCG00013331


Basic Information

Item Value
RNA id AMCG00013331
length 1539
RNA type mRNA
GC content 0.46
exon number 4
gene id AMCG00013331
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 28492946 ~ 28495999 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGCATACTTCCTCCAGACCGAACTGGAGGCGGGGCTGTTGAACAGAGAGCTCATATCAAAAGTAATGAACATAGTCTTAGTCTTACTACAGTTGTACTTGTATCACATTAAACGGTGACCAAAATtatattaagtgtttttaaacattctttAGAGGGTGAATTCCTCAATGAGgcctttcatttgtatttgaaatgtgctTGTTACATCATCACAGATTGCTTCCAGCGGAGGAGGGTCAGTAAAATATTCGTTGTTGGCTTCATTACTCTTTGAAAACAGCTGGACAGCTCCCCGCAAACCATGAGGGGCTTTCATTCCATGTTTTGGATGTCTTTCGTGGCAGCACTGGTATTTGagCCCAGTGTGTTTTCAGCTCCACGGGATGTCGTGTACCTGGAGAGTCGAGAAGGGGGCTCTGTAGTGCTCCACTTCGTGTCCCAGAACGGAAATGATTCTCCAACAGGATTCTACCTGAGGAGAAAACACCCCGGACCTGTGTTTGAAATGCTGTTTCTGGACGCAGACACCGCCGATTCAACTGTCGAATCCTGGTACAGCGGTCGCCTTAAGATCGCTGGGAAGCTGAGCTCAAACAAACTCAACGTGACCATTTCTGATCTCAGGCACAACGACTCTGGGTTGTATGTCTGTGACTTCCTCTATGAAGCCGTTACCCACTACAGAAATGTCTCCGGAAAAAAcgactttgttgtttttgtaaaaagaaCAGAGAACCTGCGCTGCTCCAGTTACCCGACCTTGTTGTTCTCCATATCCGGAGCCGTGGGCCTGCTGTTGGTCATCGTGGTCGTGCTGTGTACCATTCAGTGTACCAAGTTGTGGTGCAAGGCAAAACCAAAAGCCAACGATGTCGTGTATGAAGACATGGGCCGCTTGCAGCCAGCCGGAAAGCGAATTCCTCACGGTTTCGCTGAACTGTCGCACCTGGAGGAAAAGGAAACCTCAGCACCCCTCAACAACACGTACGAGTCTCACTACAACAACCTGATCACCGGCACCCCCTCCCTGTAACTCGAGACCCTACAGGAGGGCGACAAAGGACAAACGGACGGACTATAGGGAAGACACCTGCATCTCACCAGTCGATTACACAGACCACCAGCTGAGGGAAATCTGCTTTCCTCTGCCACCCATCACAGAGAACGGAGGCCCTTTGACCACTTGACTCTGACACAGGTCCTTTCTCTCCAGGCCAGCACTGGCCAAATAATCACACAGACAGACGTGTGTGATCTGAGTGACATTAATGCTTGTAATACTGAGAGCGGTTTAGTGTTTATATCCAGTTATTGCGCTCTATGAGAACGTTAACGTCAACGATAGGTTTCCCAGATTAACTGATTAATGctaatgcaaattacaaacttaaaTGGACTTCAAAAAGCCCAATTAACATGTACATTCATGCTTATTAATGCAATGCGGTTCGATGACTCTCAAATGTGTTAATAGAATGAATCccatgtatactgtatatttattaagcATTAATAAATGGTTGATTGTAGCGCCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54463 lncRNA downstream 1850 28488842 ~ 28491096 (-) True G43691
TU54462 lncRNA downstream 10891 28481732 ~ 28482055 (-) True G43690
TU54461 lncRNA downstream 12463 28480085 ~ 28480483 (-) True G43689
TU54460 lncRNA downstream 15438 28477155 ~ 28477508 (-) True G43688
TU54459 lncRNA downstream 16846 28475456 ~ 28476100 (-) True G43687
TU54496 lncRNA upstream 180825 28676824 ~ 28722166 (-) True G43714
TU54497 lncRNA upstream 180825 28676824 ~ 28767352 (-) False G43714
TU54508 lncRNA upstream 220292 28716291 ~ 28717940 (-) True G43724
TU54511 lncRNA upstream 241958 28737957 ~ 28738773 (-) True G43725
TU54654 lncRNA upstream 619223 29115222 ~ 29117961 (-) True G43834
AMCG00013326 mRNA downstream 274888 28210403 ~ 28218058 (-) True AMCG00013326
AMCG00013325 mRNA downstream 293153 28196957 ~ 28199793 (-) True AMCG00013325
AMCG00013319 mRNA downstream 362814 28128668 ~ 28130132 (-) True AMCG00013319
AMCG00013318 mRNA downstream 414244 28074541 ~ 28078702 (-) True AMCG00013318
AMCG00013313 mRNA downstream 565619 27917922 ~ 27927327 (-) True AMCG00013313
AMCG00013332 mRNA upstream 6023 28502022 ~ 28521437 (-) True AMCG00013332
AMCG00013339 mRNA upstream 275934 28771933 ~ 28777474 (-) True AMCG00013339
AMCG00013348 mRNA upstream 478691 28974690 ~ 28989005 (-) True AMCG00013348
AMCG00013349 mRNA upstream 495438 28991437 ~ 28996380 (-) True AMCG00013349
AMCG00013347 mRNA upstream 565889 29061888 ~ 29063240 (-) True AMCG00013347
TU54456 other downstream 25040 28467312 ~ 28467906 (-) True G43684
TU54344 other downstream 420159 28068213 ~ 28072787 (-) True G43594
TU54196 other downstream 923795 27568764 ~ 27569151 (-) True G43473
TU54172 other downstream 1199873 27273229 ~ 27293073 (-) True AMCG00013295
TU53964 other downstream 1935622 26556354 ~ 26557324 (-) True AMCG00013264
TU54700 other upstream 757397 29253396 ~ 29254316 (-) True G43869
TU54894 other upstream 1510765 30006764 ~ 30010700 (-) False G44034
TU54953 other upstream 1585037 30081036 ~ 30083345 (-) False AMCG00013386
TU54954 other upstream 1585037 30081036 ~ 30083345 (-) True AMCG00013386
TU55007 other upstream 1669818 30165817 ~ 30169136 (-) False AMCG00013390

Expression Profile