RNA id: AMCG00013332


Basic Information

Item Value
RNA id AMCG00013332
length 1548
RNA type mRNA
GC content 0.49
exon number 7
gene id AMCG00013332
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 28502022 ~ 28521437 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCAGGGCAGTGGTCCTCCTTCGCAGGGAGAAACTGAAGACTTACATCACAGGCACAACTCCATACAGGTGCTGCCGCAAATTGCTCACGAAGACGTGGCTGGTTTTGTCAATGTCACATCAATCAAACAAGCGGAGTCGCCCGCCCACCGGGCCGCAGTGGAGCAGGTCCACCTGGTTGGGGATGGCAGGACGAGCGCGCTGAGGCCGCGGGGACAGCGCTCGAGACAGCCGGAGCGGACTGTGTTGTTAGTCTTGAAAGAAACCCTGTTAGTATTCTGTTTATTCCTGGGGTTCCTGACGGGTCTAAGCTGCAACAGGGCTGAGAGAAACAAATCCAGGATGGGAACTGCGGAGCTGCGGGTTGCTTTGTTTTGGCTCTTTGCAGTGTTCACGGTCACCTCAACCAATAATTTTGTGGACCTGGAAGTAAATGCATTGCTTCCAGAGAGATACAATACCAGCACCACACTGAACTGTCACATATCCTCAGAGATGGACCTGGGGAACATTAACATCCGTTGGAGTAAGGTAGAGAACAAAAGCATCTTGTGTGAATACACTACAGCCGGTGGGGTTGTACCACAAGCTACATGTACCTTCAGTGACCGGCAACTATCCCTGACCATTCCGCATGTAGTGCCCTCAGATGAAGGGAGATACATTTGCAAATTCAAGTCGAAAGCCGGGATGAAGTATGCAGACACAACTGTGACCCTGCCCgATCAGTACGAGAACGTCCAGTTGGAAAAATCTCTTCCGAACCTGACGTGCAGCTTTTACGGAGTTAACCGGGCTGGGGAAGTGCACTGGTTTACCGGGAACACAAACCTGACCACCAGTGAAGTCACCAGCTACAGTCAACTAACCAAAGAGGGTCTGTTCAACATCATCGGCACACACAACACCGAGGACAGTCGAGAGCCCACATACACCTGCGCCCTGTGGATCTACAGGACAGGGGCATACTTAACGAATGAGACGATCCATTTCCCCAGTGAAGTCAGAACTGTCCCAACTGGGAGCGCTGGCACTGCAGAAATGGCgccattattgttattgtacacCCTGTTTTCAATTGCTTGTTACTCGACCCTTTAGCAGAGACGCACCTGCCCCAGGTAGGTCTCCACCTGGTCAGAGGAGGAACAGAGACAACCCTGCAGaaggagaaaggaaagaaaagaggaCAAGAGCCTCCGTTGATGCTTTGTACATCTTCCATGTgatctattttttaataacttgaTAAAACCCATCAAGATTGCACAACTTCTGCTTTACACGTAGTTTCTGGCAGTGTGCAGTTTTGTCTTCAGACCCCGTCTGCACTCGGCAATCGCCCCAGGAACTCGAGtgaaaatgagtgaaaatacCATCAATTAATTTAGGATGTTGGGGGGATGGCGGCAactaaataaaagcatattatCAAAGAATGGCTTTTAGAAACAGATGAAAAGTTGCATGCCAAAGCACAATGTAATGTACAAATCCCCAAGGATTGTAAACTCCTGTTAcctattaaaatatacttagAAAACCCTG

Function

GO:

id name namespace
GO:0045111 intermediate filament cytoskeleton cellular_component
GO:0005882 intermediate filament cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54463 lncRNA downstream 10926 28488842 ~ 28491096 (-) True G43691
TU54462 lncRNA downstream 19967 28481732 ~ 28482055 (-) True G43690
TU54461 lncRNA downstream 21539 28480085 ~ 28480483 (-) True G43689
TU54460 lncRNA downstream 24514 28477155 ~ 28477508 (-) True G43688
TU54459 lncRNA downstream 25922 28475456 ~ 28476100 (-) True G43687
TU54496 lncRNA upstream 155387 28676824 ~ 28722166 (-) True G43714
TU54497 lncRNA upstream 155387 28676824 ~ 28767352 (-) False G43714
TU54508 lncRNA upstream 194854 28716291 ~ 28717940 (-) True G43724
TU54511 lncRNA upstream 216520 28737957 ~ 28738773 (-) True G43725
TU54654 lncRNA upstream 593785 29115222 ~ 29117961 (-) True G43834
AMCG00013331 mRNA downstream 6023 28492946 ~ 28495999 (-) True AMCG00013331
AMCG00013326 mRNA downstream 283964 28210403 ~ 28218058 (-) True AMCG00013326
AMCG00013325 mRNA downstream 302229 28196957 ~ 28199793 (-) True AMCG00013325
AMCG00013319 mRNA downstream 371890 28128668 ~ 28130132 (-) True AMCG00013319
AMCG00013318 mRNA downstream 423320 28074541 ~ 28078702 (-) True AMCG00013318
AMCG00013339 mRNA upstream 250496 28771933 ~ 28777474 (-) True AMCG00013339
AMCG00013348 mRNA upstream 453253 28974690 ~ 28989005 (-) True AMCG00013348
AMCG00013349 mRNA upstream 470000 28991437 ~ 28996380 (-) True AMCG00013349
AMCG00013347 mRNA upstream 540451 29061888 ~ 29063240 (-) True AMCG00013347
AMCG00013353 mRNA upstream 577550 29098987 ~ 29114047 (-) True AMCG00013353
TU54456 other downstream 34116 28467312 ~ 28467906 (-) True G43684
TU54344 other downstream 429235 28068213 ~ 28072787 (-) True G43594
TU54196 other downstream 932871 27568764 ~ 27569151 (-) True G43473
TU54172 other downstream 1208949 27273229 ~ 27293073 (-) True AMCG00013295
TU53964 other downstream 1944698 26556354 ~ 26557324 (-) True AMCG00013264
TU54700 other upstream 731959 29253396 ~ 29254316 (-) True G43869
TU54894 other upstream 1485327 30006764 ~ 30010700 (-) False G44034
TU54953 other upstream 1559599 30081036 ~ 30083345 (-) False AMCG00013386
TU54954 other upstream 1559599 30081036 ~ 30083345 (-) True AMCG00013386
TU55007 other upstream 1644380 30165817 ~ 30169136 (-) False AMCG00013390

Expression Profile