RNA id: AMCG00013334


Basic Information

Item Value
RNA id AMCG00013334
length 291
RNA type mRNA
GC content 0.57
exon number 1
gene id AMCG00013334
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 28610105 ~ 28610395 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCGCTCTCAGCATGTGACTCGGTCTGCCGTCTTTGCCGTCTTAGGTGCCACATCCGAGTGATTGACACCTTCGGCACTGAGCCGGCCTACAACCACGAGGAGTACGCCACCCTGCACGGGTACCGGACCAACTGGGGCTACTGGAACCTCAACACCAAGCAGTACATGACCATGTTCCGTGAGTACAGCCGTTCGGACCTAAGCAGAGTGGCCGTAGCTACGGTTCCTCAGCAGCGAAGCTCTCCACACCGTAGTCATGTGACAAGGTGTCTCATTCTCCGCATTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54444 lncRNA upstream 220145 28389689 ~ 28389960 (+) True G43673
TU54325 lncRNA upstream 537306 28068646 ~ 28072799 (+) True AMCG00013317
TU54159 lncRNA upstream 1192318 27270028 ~ 27417787 (+) True G43438
TU54122 lncRNA upstream 1599454 27010372 ~ 27010651 (+) True G43402
TU54035 lncRNA upstream 1705142 26897509 ~ 26904963 (+) True AMCG00013286
TU54481 lncRNA downstream 70415 28680810 ~ 28682174 (+) True AMCG00013336
TU54482 lncRNA downstream 70415 28680810 ~ 28682174 (+) False AMCG00013336
TU54489 lncRNA downstream 127728 28738123 ~ 28738753 (+) True G43712
TU54625 lncRNA downstream 539583 29149978 ~ 29151334 (+) True G43810
TU54612 lncRNA downstream 546304 29156699 ~ 29158493 (+) True G43799
AMCG00013335 mRNA upstream 3222 28599903 ~ 28606883 (+) True AMCG00013335
AMCG00013330 mRNA upstream 27851 28566098 ~ 28582254 (+) True AMCG00013330
AMCG00013329 mRNA upstream 126127 28464362 ~ 28483978 (+) True AMCG00013329
AMCG00013327 mRNA upstream 266618 28322909 ~ 28343487 (+) True AMCG00013327
AMCG00013328 mRNA upstream 304497 28303353 ~ 28305608 (+) True AMCG00013328
AMCG00013333 mRNA downstream 908 28611303 ~ 28623511 (+) True AMCG00013333
AMCG00013336 mRNA downstream 66147 28676542 ~ 28686138 (+) False AMCG00013336
AMCG00013337 mRNA downstream 93652 28704047 ~ 28716412 (+) True AMCG00013337
AMCG00013338 mRNA downstream 117178 28727573 ~ 28733671 (+) True AMCG00013338
AMCG00013340 mRNA downstream 185351 28795746 ~ 28799306 (+) True AMCG00013340
TU54454 other upstream 121322 28484273 ~ 28488783 (+) True G43682
TU54319 other upstream 674167 27934074 ~ 27935938 (+) False AMCG00013310
TU54201 other upstream 1019287 27589139 ~ 27590818 (+) True G43476
TU54169 other upstream 1194819 27385665 ~ 27415286 (+) True AMCG00013298
TU54155 other upstream 1451384 27158302 ~ 27158721 (+) True G43434
TU54615 other downstream 493894 29104289 ~ 29104577 (+) True G43802
TU54772 other downstream 1030228 29640623 ~ 29658948 (+) False AMCG00013364
TU54850 other downstream 1310672 29921067 ~ 29928697 (+) False AMCG00013375
TU55045 other downstream 1608515 30218910 ~ 30222209 (+) False AMCG00013396
TU55098 other downstream 1880432 30490827 ~ 30495656 (+) True AMCG00013416

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00050723 True 1530 mRNA 0.53 9 NC_007114.7 59117136 ~ 59167824 (+)