RNA id: TU54482



Basic Information


Item Value
RNA id TU54482
length 418
lncRNA type sense_over
GC content 0.53
exon number 3
gene id AMCG00013336
representative False

Chromosome Information


Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 28676542 ~ 28686138 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CCTCCCTGCAGAGGACGCGGAAGTGCGCCATTCGCGGCGGCGCGGAGCAGAGGACGGAGGCGCTCCCTCTCGGTGTGCAGGGCGTGCTGGCGGAAGGATGCTGAGGAGTTGAAGATGGTGAGATGACCTTGTTCGCGGGGTCAAGTGGAGGACTTGAGGTAAGTACAGGTGGATGTCTCTGGAGGAGCAGGTTCCTGACCGTGCACAGAGAGGTGAGGCATCTGTGTTGAGCCAAGCGGTGTCCCATCCTTGGATATTGCAGCTCCTGTGGAAACTGTGCACTGTTTTGGTCTGTGGGATGACCTTTTCAGTGCCTCTTTGACAGCAATGCTTTTATCTCTGAACAAAATGGAGAATCCTAGTAATTTCTGTAACTTGCAAGATCAAGGTGTTTTTGTGAAATGCTGTATCAAATAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU54444 lncRNA upstream 290850 28389689 ~ 28389960 (+) True G43673
TU54325 lncRNA upstream 608011 28068646 ~ 28072799 (+) True AMCG00013317
TU54159 lncRNA upstream 1263023 27270028 ~ 27417787 (+) True G43438
TU54122 lncRNA upstream 1670159 27010372 ~ 27010651 (+) True G43402
TU54035 lncRNA upstream 1775847 26897509 ~ 26904963 (+) True AMCG00013286
TU54489 lncRNA downstream 55949 28738123 ~ 28738753 (+) True G43712
TU54625 lncRNA downstream 467804 29149978 ~ 29151334 (+) True G43810
TU54612 lncRNA downstream 474525 29156699 ~ 29158493 (+) True G43799
TU54679 lncRNA downstream 494877 29177051 ~ 29178266 (+) False G43853
TU54680 lncRNA downstream 494877 29177051 ~ 29178266 (+) False G43853
AMCG00013333 mRNA upstream 57299 28611303 ~ 28623511 (+) True AMCG00013333
AMCG00013334 mRNA upstream 70415 28610105 ~ 28610395 (+) True AMCG00013334
AMCG00013335 mRNA upstream 73927 28599903 ~ 28606883 (+) True AMCG00013335
AMCG00013330 mRNA upstream 98556 28566098 ~ 28582254 (+) True AMCG00013330
AMCG00013329 mRNA upstream 196832 28464362 ~ 28483978 (+) True AMCG00013329
AMCG00013337 mRNA downstream 21873 28704047 ~ 28716412 (+) True AMCG00013337
AMCG00013338 mRNA downstream 45399 28727573 ~ 28733671 (+) True AMCG00013338
AMCG00013340 mRNA downstream 113572 28795746 ~ 28799306 (+) True AMCG00013340
AMCG00013341 mRNA downstream 159578 28841752 ~ 28914840 (+) True AMCG00013341
AMCG00013342 mRNA downstream 236579 28918753 ~ 28936041 (+) True AMCG00013342
TU54454 other upstream 192027 28484273 ~ 28488783 (+) True G43682
TU54319 other upstream 744872 27934074 ~ 27935938 (+) False AMCG00013310
TU54201 other upstream 1089992 27589139 ~ 27590818 (+) True G43476
TU54169 other upstream 1265524 27385665 ~ 27415286 (+) True AMCG00013298
TU54155 other upstream 1522089 27158302 ~ 27158721 (+) True G43434
TU54615 other downstream 422115 29104289 ~ 29104577 (+) True G43802
TU54772 other downstream 958449 29640623 ~ 29658948 (+) False AMCG00013364
TU54850 other downstream 1238893 29921067 ~ 29928697 (+) False AMCG00013375
TU55045 other downstream 1536736 30218910 ~ 30222209 (+) False AMCG00013396
TU55098 other downstream 1808653 30490827 ~ 30495656 (+) True AMCG00013416

Expression Profile