RNA id: AMCG00013337


Basic Information

Item Value
RNA id AMCG00013337
length 1635
RNA type mRNA
GC content 0.60
exon number 13
gene id AMCG00013337
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 28704047 ~ 28716412 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAAGAAACAACCTTGAAGAGTTCAAAGAGTTCAGTCCTGTCCCCACCCTGTGTGAAGCGACAGTCACGCAtggcctaCGAGAGGCGGTTCCCCACGTGCCCTCTGATCCCGATGTTCGTGGACAGCGACATAGTCAGCGAATTCAACAGCGAGGACGGCGCCGTGCACATGGTGGAGCGCCGCTGCAAGCTCGATGTGGATGCCCCGCGGCTGCTCAAGAGGatcGCGGGGGTCGATTATGTCTACTTTGTGCAGAAGAACTCCCTGAACCGCAGAGAGAGGACCCTCCAGATCGAGGCACACAACGAGACCTTCTCCAACCGGGTCATCATCAACGAGCTGTGCTGCTACAGCGTTCACCCAGACAATGAGGACTGGACCTGTTTCGAGCAGCTGGCCAGCCTGGACATCAAGTCTTTCTTCGGGTTCGAGAGCACGGTGGAAAAGATCGCCATGAAGCAGTACACCAGCAGTATTAAAAAGGGCAAAGAAATCATCGAGTATTACTTgcgggagctggaggaggagggcgTGACGCACATCCCACGCTGGACTCCTTCGGCTGTGTGTCCCGCCAAGGCCACCGTCACTGCCAGGCCCGAGCTGCCCATCTCCCCCGCCATCAGCATCCCCATCGCCAGCGCCAAGGAAGCCCCTAAAGAGACCCCCAGCCTGCCAGGCAGCCTCACTGAGCCGCTCACCGGCACCCCCGACGACAAACTGGAGGCCGACTACATCGAGCGCTACCTGGGCGACCTGACGCCGCTGCAGGAGAGCTGCCTGATCCGGCTGCGCCAGTGGCTGCAGGAGACGCACAAGGGCAAGATCCCCAAGGACGAGCACATCCTGCGCTTCCTGCGGGCGCGCGACTTCAACATCGACAAGGCGCGCGAGATCCTGTGCCAGTCACTCACCTGGAGGAAGCAGCACCAGGTGGACTATCTTCTGGAGACCTGGACCTCCCCCCAGGTCCTGCAGGACTTCTACACTGGCGGGTGGCACCACCACGACAAAGATGGCCGGCCTCTTTACATCCTGCGGCTGGGACAGATGGACACGAAGGGGTTGGTCCGCGCCCTCGGGGAGGAGTCTCTGCTGCGCCACGTGCTCTCGATAAACGAGGAAGGGCTGCGGCGATGTGAGGAGAACACCAAAGTCTTCGGACGACCGATAAGcTCCTGGACGTGCCTGGTGGACCTGGAGGGGCTGAACATGCGTCACCTGTGGCGTCCGGGCGTGAAGGCACTGCTGCGCATCATTGAGGTCAGCCCGTTCATCGACGACAACACGCGCAAGAAGTTCCTGATCTACGCCGGAAACGACTACCAGGGCCCCGGCGGCCTGGTGGACTACATCGACCGGGAGATCATCCCCGACTTCCTGGGGGGCGAGTGCATgTGTGAGGTTCCAGAAGGGGGGCTGGTCCCCAAGTCTCTGTACCGGACCACCGAGGAGCTGGAGAACGAGGACATCCGCCTGTGGACAGAGACCATCTACCAGAGTGCCAGCGTCTTCAAGGGAGCCCCCCACGAGGAAACTCTCTTTCTACAACAAGATCAACCGTCAGCAGCAGCACCCAGCGTCTCGAAGCATCAGGACGACTACGACACCCCTAATGAAGACAGCGAGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54481 lncRNA upstream 21873 28680810 ~ 28682174 (+) True AMCG00013336
TU54482 lncRNA upstream 21873 28680810 ~ 28682174 (+) False AMCG00013336
TU54444 lncRNA upstream 314087 28389689 ~ 28389960 (+) True G43673
TU54325 lncRNA upstream 631248 28068646 ~ 28072799 (+) True AMCG00013317
TU54159 lncRNA upstream 1286260 27270028 ~ 27417787 (+) True G43438
TU54489 lncRNA downstream 21711 28738123 ~ 28738753 (+) True G43712
TU54625 lncRNA downstream 433566 29149978 ~ 29151334 (+) True G43810
TU54612 lncRNA downstream 440287 29156699 ~ 29158493 (+) True G43799
TU54679 lncRNA downstream 460639 29177051 ~ 29178266 (+) False G43853
TU54680 lncRNA downstream 460639 29177051 ~ 29178266 (+) False G43853
AMCG00013336 mRNA upstream 17909 28676542 ~ 28686138 (+) False AMCG00013336
AMCG00013333 mRNA upstream 80536 28611303 ~ 28623511 (+) True AMCG00013333
AMCG00013334 mRNA upstream 93652 28610105 ~ 28610395 (+) True AMCG00013334
AMCG00013335 mRNA upstream 97164 28599903 ~ 28606883 (+) True AMCG00013335
AMCG00013330 mRNA upstream 121793 28566098 ~ 28582254 (+) True AMCG00013330
AMCG00013338 mRNA downstream 11161 28727573 ~ 28733671 (+) True AMCG00013338
AMCG00013340 mRNA downstream 79334 28795746 ~ 28799306 (+) True AMCG00013340
AMCG00013341 mRNA downstream 125340 28841752 ~ 28914840 (+) True AMCG00013341
AMCG00013342 mRNA downstream 202341 28918753 ~ 28936041 (+) True AMCG00013342
AMCG00013343 mRNA downstream 253116 28969528 ~ 28970154 (+) True AMCG00013343
TU54454 other upstream 215264 28484273 ~ 28488783 (+) True G43682
TU54319 other upstream 768109 27934074 ~ 27935938 (+) False AMCG00013310
TU54201 other upstream 1113229 27589139 ~ 27590818 (+) True G43476
TU54169 other upstream 1288761 27385665 ~ 27415286 (+) True AMCG00013298
TU54155 other upstream 1545326 27158302 ~ 27158721 (+) True G43434
TU54615 other downstream 387877 29104289 ~ 29104577 (+) True G43802
TU54772 other downstream 924211 29640623 ~ 29658948 (+) False AMCG00013364
TU54850 other downstream 1204655 29921067 ~ 29928697 (+) False AMCG00013375
TU55045 other downstream 1502498 30218910 ~ 30222209 (+) False AMCG00013396
TU55098 other downstream 1774415 30490827 ~ 30495656 (+) True AMCG00013416

Expression Profile