RNA id: AMCG00013341


Basic Information

Item Value
RNA id AMCG00013341
length 4762
RNA type mRNA
GC content 0.61
exon number 32
gene id AMCG00013341
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 28841752 ~ 28914840 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctcaggcCCGCTACAAGCAGAGCCTGGACCCCACAGTGGATGAGGTGAAGAAGCTGTGCACCTCGCTGCGCCGCAACGCCAAGGAGGAGAGGGTGCTGTTCCACTACAACGGGCACGGCGTGCCACGGCCCACGGTCAACGGGGAGATCTGGGTCTTCAACAAGAACTACACCCAGTACATCCCCCTGTCCATCTATGACCTGCAGACCTGGATGGGCAGCCCGTCCATCTTCGTGTACGACTGCTCCAACGCCGGCATCATCGTCAAGTCCTTCAAGCAGTTTGCCCTGCAGCGGGAGCAGGAGCTGGAGGTCGCTGCTATCAACCCAAACCACCCCCTGGCCCAGATGCCGCTCCCGCCCTCCATGAAGAACTGTATCCAGCTGGCAGCCTGTGAGGCCAGTGAGCTGCTGCCCATGAACCCTGACCTCCCCGCCGACCTCTTCACCTCCTGCCTGACCACGCCCATCAAGATCGCCTTGCGCTGGTTCTGTATGCAGAAGAGTGCCAAGCTGGTGCCCGGGGTGACGCTGGACCTCATCGAGAAGATCCCCGGGCGGCTCAACGACCGGCGCACCCCACTGGGGGAGCTCAACTGGATCTTCACCGCCATCACGGACACCATCGCCTGGAACGTGCTGCCCAGAGATCTCTTTCAGAAACTGTTCCGCCAGGACCTGCTGGTGGCGAGCTTATTTCGCAACTTCCTATTGGCCGAGAGGATCATGAGGTCATACAACTGCACCCCCGTCAGCAGCCCGCGCCTGCCACCCACCTACATGCACGCCATGTGGCAGGCCTGGGACCTTGCCGTGGACATCTGCCTGTCCCAGCTCCCCACCATCATCGAGGAGGGCACGGCCTTTAGGCACAGTCCCTTCTTCGCCGAGCAGCTGACTGCGTTCCAGGTGTGGCTGACCATGGGAGTGGAGAACAGGAACCCCCCCGAGCAGCTGCCCATCGTCCTGCAGGTCCTCCTGAGTCAGGTGCACCGGCTGAGAGCTCTGGACCTGCTGGGCCGCTTCCTGGACCTGGGTCCCTGGGCCGTCAGTCTGGCCCTGTCGGTGGGCATCTTCCCCTACGTCCTCAAGCTGCTGCAGAGCTCGGCCCGAGAGCTGCGACCCTTACTGGTCTTCATCTGGGCCAAGATCCTGGCCGTGGACAGTTCGTGTCAAGCTGATCTGGTGAAGGACAACGGCCACAAGTACTTCCTGTCGGTCCTCGCCGACCCCTACATGCCGGCCGAGCATCGGACCATGGCGGCCTTCATACTGGCCGTGATCGTGAACAGCTACAACACAGGACAGGAGGCCTGCCTGCAGGGGAACCTCATTGCGATCTGCCTGGAGCAGCTGAACGACCCGCACCCCCTCCTGCGCCAGTGGGTGGCCATCTGCCTCGGCCGCATCTGGCAGAACTTCGACTCAGCGCGCTGGTGTGGCGTGCGGGACAGCGCTCACGAGAAGCTCTACAACCTGCTGTCAGACCCTATCCCCGAGGTACGCTGTGCTGCAGTGTTCGCCCTGGGCACCTTCGTGGGCAACTCGGCGGAGCGGACAGACCACTCCACCACCATCGACCACAACGTGGCCATGATGCTGGCACAGCTCATCAATGACGGCAGCCCCGTGGTGCGCAAGGAGCTGGTGGTGGCACTGAGTCACCTGGTAGTCCAATACGAGAGCAACTTCTGCACCGTGGCGCTGCAGTtcatggaggaggagaagaactACGCCGTGCCCTCGCCAGCCAGCAACACAGAGCCCGGGAGCCTGACACCCGTGAGGGACAGCCCAGCCATCCCCCGGCTCCGCTCTGTCAGTTCCTATGGCAACATCCGGGCCGCTACCACGGTCCGCAACCTGAATAAGAGCCTCCAGAACCTCAACCTGAACGAGGAGGGGGGCCCCATCGCCTTCTCCCCAGGGAACCTGAGCACCAGCAGCAGCGCCAGCAGCACCCTGGGCAGCCCGGACAACGACGAGTACATCCTGTCCTTCGAGACCATCGACAAGATGAGGAGGGTCAGCTCCTACTCCTCCCTCAACTCCCTCATTGGGGTGTCCTTTAACAGTGTGTACACTCAGATCTGGAGAGTGCTGCTGCACCTGGCCGCCGACCCCTTCCCCGAGGTGTCCGACCTGGCCATGAAGGTCCTGAACAGCATCGCCTACAAGtctctatccctctctccctccccgcAGGCCACCATGAACGCCCGTCCCCAGAGGATCCTGGACTCCGGCTCCCTCACCCAGTCTGCCCCCGCCAGCCCCACCAGCAAAGGAGCGCACATCCACCAGGCCGGCGGCTCCCCCCCGATGCCCAGCACCAGCAGCTCCAGCCTGACCAACGAGGTGCCCAAACCACCGGTCCGAGACCTGCCCCCGGCCCGGCCGCCCTACACCCCCACGCTGGGTGGCCAGGCCCCGCACTCGCACCAGTTCCCGCGCACACGCAAGATGTTCGACAAGGGCCCCGATCAGatgGCTGATGACGGTGATGAGCCAGGCGGACACCGGAACTTCATCAGCGCTGCCATGCAGACCGGCTTGTGCGACTGGAGCGCCAAGTACTTCGCTCAGCCCGTCATGAAGATCCCGGAGGAGCACGACGTGGAGAGCCAGGTGCGCAAGGAGAGGGAGTGGAGGTTCCTGAGGAATGGCCGAGTGAGAAGGCAGAGCCAGCGCATCACACAGCGCGGAATCTCCCGCCTGGACGACCAGATCTTCATCAACCGCAACCCCGGCGTGCCCTCGGTGGTCAAGTTCCACCCCTTCAACCCCTGCATCGCCGTGGCCGACAGAGACAGCATCTGCTTCTGggactgggagaagggggagaaGCTGGACTATTTTTACAACGGCAATCCTCGCTATACCCGCATCACGGCCATGGAGTACCTGAACGGACACGACTGCTCCCTGCTGCTCACGGCCACAGACGATGGGGCGCTGCGCATCTGGAAGAACTTCGCCGACCTGGAGAGGAACCCAGAGATGGTCACCGCCTGGCAGGGCTTGTCAGACATGCTGCCCACGACCCGTGGTCTGGCCAGAAGGGTTTCAATCTATCTTGACAGGAGTAAGCAGGGAGGAGCTGGAATGGTAGTGGACTGGGAGCAGGAGACGGGGCTGCTGATGACCTCGGGGGATGTGCGCGTCATCCGGGTCTGGGACACAGACCGGGAGATGAAGGTCCAGGACATCCCAACGGGTGCGGACAGCTGTGTGACCAGCCTGTCCTGCGACTCCCAGCGCTCCCTGATCGTGGCGGGGCTGGGTGACGGCTCGGTGCGCGTCTATGACCGGAGGATGGCCCCCAACGAGTGCCGTGTGATGACGTACCGGGAGCACGGCGCCTGGGTGGTGAAGGCACACTTGCAGAAGGAGACTGACGGACACATCATCAGCGTCAGTGTGAACGGTGACGTGCGCTTCTTCGAGCCCCGGATGCCAGACTCGGTCAACGTGCTGCAGACGGTGAAAGGGTTGACGGCCCTCGACATCCACCCGCAAGCTAACCTGTTCGCCTGCGGCTCCATGAACCAGTTCATCGCCGTGTACAACGCCAGCGGAGATGTCATCAGCAACATCAAGTACTATGACGGGTTCATGGGCCAGAGGATCGGCGCCATCAGCTGCCTGGCTTTCCATCCCTACTGGCCCCACCTGGCAGTCGGCAGCAACGATTACTACATGTCCATCTACTCGGCGGAGAAGAGACTGAGATAACATCACTgcaccccccccactctctccacGCCTCTTGAACAACCCTGTAAATTACTCTTCTCCTGTACATATCCCATTACCAACTTGAATGTCTAGTGATGGCTGCTGCTACTCATGAATTCTtctaattgttattgttatggtGATGATGGGCTACTGATTGTAGACTTGGCTGTGCTGAGgagtgtgtatatttaattgcCTATACAGATTATAGAGATATTTTAAGCCCCCCGCTTTCCGTGTGAACTCTTCCTGCGAGCTGCGGCCGGGCCGACGGGCAACCACAATCGCACGCCTCCACCCAGGATATCGGCTCTCATGTCGCTCTTTATTTTTATCCAGAGCCTGTGAACTGCGAGACGTGTTCATGCCGCGGTCCTGAACAGGGCGAGCTCAGAGTAGCGACACAGCACTTTAGCGAGAACGTCTGTAGAAAGCAGAGATGCGGGGTTTCAGGAAGTGACCTCCGGTTGCACAGAGAGGCCCGGCAGCGCCAGCAGTGCGTACTTTCCCTCGATCCCGACCTTTGCCAAATCGACTAAATCCACAGTAGTGCTTTAAGGTAGTCATGTGGGCTCGTTTGTGTACATGCTGCCCAACGCAGTCCACTCTAAAATGTCCCGTTTGTCATGTGTGTAGAAGTTGTCTAAGCTGCCTGTTGCAGAGTAAAGCAATAATTTGTCCGGGGGGTCGACTGAGACTCCCCTTGTAGCGCAAACTCGACCGATCGCCAGCGTCCTGACGCCCGACACCCTCCTGAAAGATCAGACCGTGGGATCTGTCCCAATCGATCCCCCCAGGTCTCGCTGTGCTTTCAGGGCGGACGATAGATATTCGCATTCTTAGCCTCATCCGAACCGCGACGCTTAACTCTAGCTGTGGTTTAGTGCGTTTGAGCTTTTATTCCCCGCTGGGCACAGGGGGGTGAGTGTGGTCACAGTAGCAGCACCGAGGAGCTCGACGGTGGTGCCCCCAACGGTGGGGTGCTGCGCCCCCGACTCCAGCCACTAAAAAGGCCGCatggg

Function

GO: NA

KEGG:

id description
K07204 RAPTOR; regulatory associated protein of mTOR

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54489 lncRNA upstream 102999 28738123 ~ 28738753 (+) True G43712
TU54481 lncRNA upstream 159578 28680810 ~ 28682174 (+) True AMCG00013336
TU54482 lncRNA upstream 159578 28680810 ~ 28682174 (+) False AMCG00013336
TU54444 lncRNA upstream 451792 28389689 ~ 28389960 (+) True G43673
TU54325 lncRNA upstream 768953 28068646 ~ 28072799 (+) True AMCG00013317
TU54625 lncRNA downstream 235138 29149978 ~ 29151334 (+) True G43810
TU54612 lncRNA downstream 241859 29156699 ~ 29158493 (+) True G43799
TU54679 lncRNA downstream 262211 29177051 ~ 29178266 (+) False G43853
TU54680 lncRNA downstream 262211 29177051 ~ 29178266 (+) False G43853
TU54681 lncRNA downstream 262211 29177051 ~ 29178266 (+) True G43853
AMCG00013340 mRNA upstream 42446 28795746 ~ 28799306 (+) True AMCG00013340
AMCG00013338 mRNA upstream 108081 28727573 ~ 28733671 (+) True AMCG00013338
AMCG00013337 mRNA upstream 125340 28704047 ~ 28716412 (+) True AMCG00013337
AMCG00013336 mRNA upstream 155614 28676542 ~ 28686138 (+) False AMCG00013336
AMCG00013333 mRNA upstream 218241 28611303 ~ 28623511 (+) True AMCG00013333
AMCG00013342 mRNA downstream 3913 28918753 ~ 28936041 (+) True AMCG00013342
AMCG00013343 mRNA downstream 54688 28969528 ~ 28970154 (+) True AMCG00013343
AMCG00013345 mRNA downstream 89205 29004045 ~ 29011275 (+) True AMCG00013345
AMCG00013346 mRNA downstream 107167 29022007 ~ 29029208 (+) True AMCG00013346
AMCG00013344 mRNA downstream 118302 29033142 ~ 29059640 (+) True AMCG00013344
TU54454 other upstream 352969 28484273 ~ 28488783 (+) True G43682
TU54319 other upstream 905814 27934074 ~ 27935938 (+) False AMCG00013310
TU54201 other upstream 1250934 27589139 ~ 27590818 (+) True G43476
TU54169 other upstream 1426466 27385665 ~ 27415286 (+) True AMCG00013298
TU54155 other upstream 1683031 27158302 ~ 27158721 (+) True G43434
TU54615 other downstream 189449 29104289 ~ 29104577 (+) True G43802
TU54772 other downstream 725783 29640623 ~ 29658948 (+) False AMCG00013364
TU54850 other downstream 1006227 29921067 ~ 29928697 (+) False AMCG00013375
TU55045 other downstream 1304070 30218910 ~ 30222209 (+) False AMCG00013396
TU55098 other downstream 1575987 30490827 ~ 30495656 (+) True AMCG00013416

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000112_00379383_00617969.mRNA True 3888 mRNA 0.51 34 CI01000112 379383 ~ 617969 (+)