RNA id: AMCG00013343


Basic Information

Item Value
RNA id AMCG00013343
length 627
RNA type mRNA
GC content 0.63
exon number 1
gene id AMCG00013343
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 28969528 ~ 28970154 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCTCTGGATGTGAAGGAGAAGAACCAGGTGCGCCTGGTGTTCCTGGGAGCGGCCGGCGTGGGCAAGACGGCCCTGATCCGTCGGTTCCTGCAGGACACCTTCGAGCCGAAGTACCGGCGCACCGTGGAGGAGCTGCACAGCAAGGACTACGATATCAGTGGCGTGAAGGTCACCATTGAGATCATGGACACCAGCGGCAGCTACTCCTTCCCGGCCATGCGCAAGCTGTCCATCCAGAGCAGCGACGCCTTCGCGCTGGTGTACGCCATCGATGACCCCGAGTCCCTGGAGGCCATCAAGAGCCTGCGGGACGAGATTCTGGAGGTCAAGGAGGACAAGTTCACGCCCATCGTTGTGGTGGGCAACAAGACAGACTGCGAGGAGCTGCGACGCGTGTCCAGCGAGGACGTGCTGTCCACCGTGGAGCTGGACTGGAACAACCGCTTCCTGGAGGCCTCGGCCAAGGCCAATGAGAACGTGGTGGAGGTGTTTCGGGAGCTCCTGCAGCAGGCCAACCTGCCCAGCCGGCTCAGCCCCGCACTGCGCCGCCGCCGGGAGACCTTCCCCACGGACACAGGCTCCAGGCCGCCCATGAACAAGACCAACAGCTGCTCCATCTCCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54489 lncRNA upstream 230775 28738123 ~ 28738753 (+) True G43712
TU54481 lncRNA upstream 287354 28680810 ~ 28682174 (+) True AMCG00013336
TU54482 lncRNA upstream 287354 28680810 ~ 28682174 (+) False AMCG00013336
TU54444 lncRNA upstream 579568 28389689 ~ 28389960 (+) True G43673
TU54325 lncRNA upstream 896729 28068646 ~ 28072799 (+) True AMCG00013317
TU54625 lncRNA downstream 179824 29149978 ~ 29151334 (+) True G43810
TU54612 lncRNA downstream 186545 29156699 ~ 29158493 (+) True G43799
TU54679 lncRNA downstream 206897 29177051 ~ 29178266 (+) False G43853
TU54680 lncRNA downstream 206897 29177051 ~ 29178266 (+) False G43853
TU54681 lncRNA downstream 206897 29177051 ~ 29178266 (+) True G43853
AMCG00013342 mRNA upstream 33487 28918753 ~ 28936041 (+) True AMCG00013342
AMCG00013341 mRNA upstream 54688 28841752 ~ 28914840 (+) True AMCG00013341
AMCG00013340 mRNA upstream 170222 28795746 ~ 28799306 (+) True AMCG00013340
AMCG00013338 mRNA upstream 235857 28727573 ~ 28733671 (+) True AMCG00013338
AMCG00013337 mRNA upstream 253116 28704047 ~ 28716412 (+) True AMCG00013337
AMCG00013345 mRNA downstream 33891 29004045 ~ 29011275 (+) True AMCG00013345
AMCG00013346 mRNA downstream 51853 29022007 ~ 29029208 (+) True AMCG00013346
AMCG00013344 mRNA downstream 62988 29033142 ~ 29059640 (+) True AMCG00013344
AMCG00013350 mRNA downstream 97676 29067830 ~ 29068402 (+) True AMCG00013350
AMCG00013351 mRNA downstream 109846 29080000 ~ 29091607 (+) True AMCG00013351
TU54454 other upstream 480745 28484273 ~ 28488783 (+) True G43682
TU54319 other upstream 1033590 27934074 ~ 27935938 (+) False AMCG00013310
TU54201 other upstream 1378710 27589139 ~ 27590818 (+) True G43476
TU54169 other upstream 1554242 27385665 ~ 27415286 (+) True AMCG00013298
TU54155 other upstream 1810807 27158302 ~ 27158721 (+) True G43434
TU54615 other downstream 134135 29104289 ~ 29104577 (+) True G43802
TU54772 other downstream 670469 29640623 ~ 29658948 (+) False AMCG00013364
TU54850 other downstream 950913 29921067 ~ 29928697 (+) False AMCG00013375
TU55045 other downstream 1248756 30218910 ~ 30222209 (+) False AMCG00013396
TU55098 other downstream 1520673 30490827 ~ 30495656 (+) True AMCG00013416

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00050722 True 1492 mRNA 0.41 1 NC_007114.7 59051503 ~ 59052994 (+)