RNA id: AMCG00013344


Basic Information

Item Value
RNA id AMCG00013344
length 8033
RNA type mRNA
GC content 0.52
exon number 20
gene id AMCG00013344
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 29033142 ~ 29059640 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTTTGCGTGTTTGTTTCCCTTGTTGCTGCTGCTCTTGATGAAGGTGCAGCAGGAAAGCGAAAGGGTTTCACTCGATCCCGGCGGAGTCGGGGCACCTCCACCTGCGCGCAGGTGCGACCAGGCAGCCCCGCTGGCCGGCCGTGTCTGCGCCTGTGCGCTGCGGTGGTTTAGCTACAGAACTACACAGGTGCTGCGTGTGTTGTACGTGCTGATCGTGCAATGGGGTTTAAACGTCGGAATAGTTTGCACGCCAGGGCCAGCGCTCATCCCCCGGGTACACGTTTGCCCGGGCGCGTTTCCGCGTGTTTCCAGATGCGTTTGTGTAACAGAGTTTGTGTAGCGGGGTTTGTGTAACGGGGTTTGTGTAGCGGGGTTTGTGTAACAGAGTTTGTGTAGCGGGGTTTGTGTAACAGGGGTTTGTGTAGCGGGGTTTGTGTAACAGGGTTTGTGTAACAGGGTTTGTGTAGCGGGGTTTGTGTACAGGCAGTGGTATTCCTGGAACTTCCGCCCAGCCCCCACGCTGCCCCCGGCCCCCCGGCCCTCTTCCTTCAGCTGTGTGGGGATGTGAAGTGCTCTGCTACGGCTGTCTGCTCTCTAACAGGCTCCGCTCATTGCAGTTGCAGACAGGACACATGCTTTAAGGTTACAGATGCAAAATATGAGTACAAGTCCGGttctttgtttgtctttctccaTTTCAAAATGGTAATTGCAAGAGGATTTGTTTATGCAATTGCGCCCGTTTGCTGAAGACCGGGAGGAGCGTTATTGTGGGCATCTGTGTCATTCAGATTGAGCAATTGTGCTTTCCTGTTGAAGAACATGAGATAATTGAACAGTAGCCTTTTTTATGCAATGACATTACTTTGATAGGGTGATACGTGTTTACGACGCCTATAAAGTGTAGCCTGGAGCCCTGTGGTGTCTGCTACAATGGCATTGTCTCTCAGCCTTCAAGTGCAAACTTCTCTGTCATGCTCTTTGCTTGGTAGGGCAACAAAATGAAGATCAGAGTCAAAACCTCTGCTCAACGCGCTGCTTTTACATCTCCTGTTATCTCTCTCACCCACGTACGGCCCGTGTGTGCCTTAGACATGTCAAACCACCACAGCCTGTGAGGTGTTAGAGCAGGCTTCTCAGAAACCTGGTGCAGCAGAGCTTCCCATACGCACAACACCCACCGCATCTTCTGCTTGCGTCTTGGGGATTCTGTGCCGCCGGTGTGACCCTCGGCTGTGCCCCAGACCGATGACGTCAGAGATCTAGAGTGATAGAGGAGTGGGATTTTAGAGAGTCAAGATTTTGGGCGTCGTGCTGGAAGACACCTGCTTCCGTGGCAGGGATGCCGAAAGGCCGTTAAACCACAAGACATCTGCAGGCATCGTCTGAAATGCAGCAAAAGGGGAATATGACATTGCATGAAGTGTACGAGACTCTTGATAATGgaaaaaactacttttaaaaTAGCGTGTTTATCaactgttttgactttggtttCAGTACTGCTTTTCAGCGAGGTGTTGGCATTGATggattttgtaaaacattttggaccagtgagtgtgtgtgtgtgtatgtctgtgaaAGAGAGCTATGCCATTGTCTACCTTTGATCCAGGCACACGTTTGCAGGTCCCACGCGAGGGAGCATTTGGATGTTATGAATGGGTTATATTGTCCACATTAATTCAGCCAGATCCAGAGAGATCACACTTTTGAGATGGTCAAGTAGGCACATCTGTCCCCCACATGGCTTCTCTGTTGGTCTGTTCCAACtttccattaaaacacacacacacacacacacacacacacacacaggttttgaGTGAGTGCTGTAATGTCTCCTGTGTGGCTCTGTGTGACTTTCTTACGCAATTCATGcgttcagatttttgttttctatggtctctgtactgtattatcATTATAAGTTGTAGTAGCGACAATCTTTATTCGGATCCTAGCATGACTGGACACCAGGCACGTGTCGGCTCTGACCATTTCCTCTTTCTAAGCCTGTGTTTGCAATTCAAACATGCCGTGTTTGCTCTGTATGTCAGCGCCGTGAATGACTCGACAGGAATGGCGCTCCTGATCCTGCAGGTCTGTGCGTGCCTAGGACCAGACTTTGACTTTGAATTTCCCTGAAAATATTGAGTTCCCTCACCGTATTGCacttcatatttgatttatgAGAGCTCCAAAATAGCACACTGACCCAAAACAATTAGCTATTTTGAAGGTCTAGTGTGGACGTCCACCTTTTCATGGAATCACCCTTCTGAACTTAAAATGTCAAGTATGCATtaatggctggtttcacaggccTCGGTTAGCTCGACTCTAGGGATACTCTCCCTAAAATAACAGTGGGTGGTCCATGACTAGTGTCTTCATAAActgctaattaataaataaactttaatgACTATCGTTATCATTGTTGCATTTCTTGGTATGAAATCGCCCCTGTGTGCCCTTGGTTGGAGTTTTCATTGTCTTCTTCACCCCAGAACTGTCTTGATGTCTTGGTGTTCATGCCCAACAAAAGCAACATGGTCATGAAGAACACTGCCTTAAATTTGAGCCCTGCGTCTGAACTCTCTTGTAAATACTTCCCCTCGTCACAAGTTCTGCTGTGCGCTGATGACCGAGTCTGAGTCACTCTTGTTTTCAGGATCTTGATGAAGTGGATGCACGAGGTGTGGTGATGCAAGGGGTTAAAAGAGGCTTCCTTCTTCATCTGAGGAAACTTCACTGCGAAGCCTGAAGTTCAGATACAGTCCTCACTGAGACCAGGATGGAGCCAGGCAAGACGCTCACAAtgtcagaggaggaggagcagcagcgGAACGGCAGTGACCAATCGGACAGCCGGCTGAGGAGCAAGAAGCCGCCCAGCCTGACTATCTGCATACCACCCCCAGAGGACGAGGGCAAGAATGAGGGGGACAGTGCCAAACAGCCGTCCAGACCCTCCCTGAAGATGAGTCTGAGCCAGCAGCGCTCCAGCGACATTGAAGATGGGGGGGGTGCCAGCGCCCACAGAGCCGCCTTCCAGAGACAGACCTCCATCTCGCAGAGCATCCGCAGGGGCACGGCGCAGTGGTTCGGAGTGGGCGGTGACTGCGACACCAAGCAGCAGGAATGGCAGAGGAAGAGCCTGCGCCACTGCAGCCAACGCTACGGGAGGCTCAAGGCCCAGTACCGGGAGGCGGAGATGCACAGCCAAGACATGCCTTCCTTCCAGGAATCTGTGGTTTTCATGCAGTCTGCAGAACAGAAGATCGTGGACCCCCTGGCTCGGGGACGGGCCTTCCGCTACCCTGATGAGACGGACCGCCCCCGCACACCCCACACtgtgcacccccccaccaccccggGCGTCACCTCGCTGTCCTCGTTCTCCAGCATGCGCTCGGGCTACACCCGCCTGCCGCGACGGAAGAGGGAGTCCGTGGCACGCATGAGCTTCCGCGCCGCCGCCCTGCTGCTCAAGggacGATCGGTGCTGTCTACCTCCCAGCCGCGCCGCAGTTTCCCCCACAGGAGTTTCGCTCACCCCAGCTGGCTGGAGGAGGACACGGTGGACGCCGCCGACACCTACGACTCCTTCTTCAGTAAGGCAAGGGCAgctatctctttctctctctccctctccctccctcccctgtgGCTGGCCCGCTCCGTCTGTGGGAGTCCTGCGATCGATGCCCACGAGGAGATCTCCATGGCGGACGATGTGTTTGAGTCGCCACCCCTCTCGGCCAGCTACGCTCCCCACCACCCCGGCCATTTCACGGTGGAGGCCCAGTCTGGGGAAGGGAAGTATCCCAGCCTGAGGGATTTGTCCCGTTCTCCCGCCCTGGGCGGCCCCCCCAAGCGCCGGGGCCGGCGGATCGCCTCGCAGGTCAAGCACTTCGCCTTCGACAAGAAGAGGCGCCAGTACGGCCTGGGCGTGGTGGGCAAGTGGCTGAACCGCACGTATCGCCGCAGCCTGAGCAGTAATGTGCAGAAGCAGCTGGAGGACTTCAGCAGCCACAGACCCTACTTCACCTACTGGATCACCTTCGTTCACATCATCATCACCCTGCTGACCATCGGCACGTATGGCGTCGCCCCGGTGGGCTTCGCGCAGCACGCCTCCACGGAGCTGATCCTAAGGAATAAGGGCGTTTACGAGAGCGTGAAGTACGTCCAGCAGGAGAACTTCTGGATCGGGCCGGGCTCGGACGCACTCATCCACCTGGGAGCCAAGTTCTCCCCCTGCATCCGGCAAGATCAGCAGATCCAGGAGCTCATCCAGAAGGCCAAGGCCTTGGAGCGTCACTCCGGCTGCTGTGTGCAGAACGACAACTCCGGCTGTGTGCAGACCCAGCAGGCTGACTGCTCGGAGACACTGGCGACCTTCATAAAGTGGAGAGACGAGGACGTGACGGACATGAGAAGATCGTCGGGCGCCGTGTGCCACCAGGACCCCAGGACCTGTGAGGTGCCAGCCTCCGCAAAACCACATGTCTGGCCCGATGACATCACCAAGTGGCCGGTGTGCACAGAGCAGACCCGAAATAACCACACTGGGCACAAGCACATGGACTGCGACATCAAAGGCAGGCCCTGCTGCATCGGGACCAAGGGCAGGTGTGAGATCACCACTCGGGAATATTGCACCTTCATGCACGGCTACTTCCACGAAGAAGCCACGCTCTGCTCACAGGTGCACTGTCTGGACCAGGTGTGCGGCCTCCTCCCGTTCCTCAATCCTGACGTTCCCGACCAGTTCTACCGGCTGTGGCTATCGCTCTTCCTGCACGCGGGGCTGCTGCACTGCCTGGTATCGGTTGTCTTCCAGATGACGGTGCTGCGCGACCTGGAGAAGCTGGCCGGCTGGCTGCGCATCTCCATCATTTACATCCTCAGCGGCATCACCGGCAACCTGGCCAGCGCTCTCTTCCTGCCCTACCGGGCCGAGGTACGGCACCACTCCGCCTCTGCACGAGGGCTGAGCACAGTCGAGCAAAATGGGGCGGGGCGGTTTGTGGGGCCAGCAGGGTCGCAGTTCGGGCTGCTCGCCTGCCTGTTCGTGGAGCTGTTCCAGGGCTGGCAGATGCTTGAGAAACCCTGGAAGGCCTTCCTGAAGCTGCTGGGCATCGTGCTCTTCCTGTTCCTGTGCGGCATGCTGCCCTGGATCGACAACATTGCGCACATCTTCGGCTTCCTGAGCGGCCTGCtgctctccttctccttcctgCCCTACGTCACCTTCGGCTCCTTCGACCAGATACGCAAGCGGGTCCTCATCATCTTCTCCCTGCTGGGCTTCCTGGGGCTGTTCTCCTCGCTCATCGTCTGGTTCTACTTCTACCCCATCCACTGGCACTGGCTGGAGCACCTCACCTGCCTGCCCTTCACCAGCAAGTTCTGCGAGAAGTACGACATCGACCACCTGGTGCACTAGAGCGTGGTGTGTGTCGGCCGATTGGTGCCCCCTTCAAACTTCTAAGCGACACCCTCCCAAACCACCACCTCCTTGTAGGAAATGGGGACCcccttccctctgctccacctCTCCCCTGAAGATCACCGTGCTGTGAAAGTCCCGCTATGGACACCTACAGGTCAGCGTGCCAGCCGGCTGTGGTCTAAGTGTGGTTGTTTAGTGTCCAGGTTTTAATCCAGTGTTTGCTGTGAAACTATGCAGCCTGGGGTCCGAACCCAGACAGCCAGGCACCGCCTGAGACCAGCTGCCGGAGCTTGCTGAATACCCTGCCTGGGCTGAGGGGGTATCCATGGAAAGAGCTGTGATTTCTGACTGGGCAATGACCAGCGGCCGGGGCACCTAGGGGCCCCACTGAAGGGAGCAGAGCCACAGCACAGCCCTCTGTTGGGTCGGCCAGGACTCCTGATATACGGACTGACTGCTGGACTGGGTGCAGACTTATTCTTTTGTGAAAAACACTGGAATCCCTCCACTGTAAACActaattttttatattttttattttttatgtctcATTTTCATATGCCTACATTGTTTGTTCAGGGAAGCCATAGGTTTATGTGTTTTGGCCTAATTTTCTATCTTACTGTAAACTACAGgtgaaagcagagagagagagttggttGGTTCTAGTAAGGGATGAAATGTACAAGGTTTTTTGTTGTCATCTGCAGGGGTAGTATTTTACAAGGTTTATTCTTGtaggttttccatttttaagAGACTTGAGACGTTCCCCtatccgtctctctctctcggttcTGTCCTGAGGCTGTGGTGAATCCCAGGTGTCAGGCTTTAAGAGCTGTTGGATCCTCAGGAGTGGCTTCTGAAAGATTATTATGCATTGGTGCCTTAAATCAACATACAACCTAAGAATTGTACCATTTTAATCTCATACTAAACTGTGCATTATGTCCCATCATTTGAATTAGCTTGACAATGAAGAAAGCACTACTTCtggattacacacacacacacacacgcacacttacTCATGCAGTCCGGATGCAGTACAGGCTTCTGTGGTGCAATTTGAATCAAATTCATTTCCTTGCTAGTCCTACTGTTCCCAAAGCTGCAGGGAAGGCACATTGTGTAGATGAGGacgggagggagggggggtgtaCAGAACATTAGCAACAAGGAAAACACATCTGGCGTGTGTGTTTTTTGAtgagtaaataaagaaaagggaaaaggaagGCATTGCTAATTACAGGATGTCATCATAAGGTGCTGAGGGTGTAGATTGTCCTATGCAGAGTTCAGTGGTGGGACATAGGATGCGGGTGGGAGAAATATATTGTGGAGTTTGAGTGTGTAAGTAAGCTACAGTTCCCATTGTTCGTTTTGGGTGGGTGGGGCAAAATCAAActtattttggttgttgttcatgtgtttgtttactgAGCCACGAACTTAAGTTGTAGCGTTTGGGGCTCTTGTCAGGTTTGTGAAAGGTATAACACTTGCTCATTCTAGTGGTCTGTAttacacaaatgtgtgtgtcGGCTATTTTCCCAACAGAAGGGTGACTTGTGGCCACCAGTCAGCACTGGTTATTGACGCACACTGCTGATGCACACAGTAGGAACAGACCAGTCCCATTGCACAATATCAGTACTCCAGAGCTGCCCAGCCTTTATGTAATGAGCCGGTAATtggatcaattaagtaatcaattAGTTTCCATTAATTAACACCGGACACACTGTATAGGAATACCGGGCTGGGCTGCTATCTCACGGATCACAATATGGCATTGTTGTGGAGCTAAACGTTTCAGGAGGGAATGGGTTTCTTTTCTGTCAGTTCAGTGTTTagatttttctcttctttcttgtGGATTAAAGCCACCAGGCAAGATTTACCATGTTCACCAGATCGACCAGGTTGTTATTGAGACAGAGCTGCAGTGTTTGTCTgcagcccccctcccccagtgCCGTTTGGGATTACGTTTCTAACCCGGCAGGTGTCTGATTTAaagctataaaaaaaatgactgtgAAATGGATTAAACCCTAATTGAGGGAGACTGACTTTGAGGGGCTTTGCTTAGTCATTTTCTCCCAGCTGTGCGAGTGCGATTACCCAGGGTGATTTTTACAACAATGAAACCTTTCTAAGATTGTTATTAGGAGACGGCCACACATCAATAGACTCCAGGGGCTGGGGTTTAGTGTCCATTACAGCTCAATAAACTGCCATTGAAGACTTCTCTGCCCACTTTAATACTGCAAGTCGTCTTACTaaatctgaatgtgttttttcttgttactCCTGTGTACCCGATACTCTGTCCAATCAGAACTATGCCTTCATGCCTTTGAGTTTGCCTTGAATATTTGTAAAACTTTCAGGAAATGGAGGGGGAATAGTGTCTATTATTTATTGACATTAAaacaactgtttaaaaatgaaatgtttacttgtactaaaaatatatttttgtgctgCATATTTTGATATGTCGAGAACACTCCTTTGTAcgttttaaaacaatcttgcattttatctttgaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54489 lncRNA upstream 294389 28738123 ~ 28738753 (+) True G43712
TU54481 lncRNA upstream 350968 28680810 ~ 28682174 (+) True AMCG00013336
TU54482 lncRNA upstream 350968 28680810 ~ 28682174 (+) False AMCG00013336
TU54444 lncRNA upstream 643182 28389689 ~ 28389960 (+) True G43673
TU54325 lncRNA upstream 960343 28068646 ~ 28072799 (+) True AMCG00013317
TU54625 lncRNA downstream 90338 29149978 ~ 29151334 (+) True G43810
TU54612 lncRNA downstream 97059 29156699 ~ 29158493 (+) True G43799
TU54679 lncRNA downstream 117411 29177051 ~ 29178266 (+) False G43853
TU54680 lncRNA downstream 117411 29177051 ~ 29178266 (+) False G43853
TU54681 lncRNA downstream 117411 29177051 ~ 29178266 (+) True G43853
AMCG00013346 mRNA upstream 3934 29022007 ~ 29029208 (+) True AMCG00013346
AMCG00013345 mRNA upstream 21867 29004045 ~ 29011275 (+) True AMCG00013345
AMCG00013343 mRNA upstream 62988 28969528 ~ 28970154 (+) True AMCG00013343
AMCG00013342 mRNA upstream 97101 28918753 ~ 28936041 (+) True AMCG00013342
AMCG00013341 mRNA upstream 118302 28841752 ~ 28914840 (+) True AMCG00013341
AMCG00013350 mRNA downstream 8190 29067830 ~ 29068402 (+) True AMCG00013350
AMCG00013351 mRNA downstream 20360 29080000 ~ 29091607 (+) True AMCG00013351
AMCG00013352 mRNA downstream 55813 29115453 ~ 29121435 (+) True AMCG00013352
AMCG00013356 mRNA downstream 90602 29150242 ~ 29156585 (+) True AMCG00013356
AMCG00013363 mRNA downstream 508849 29568489 ~ 29573439 (+) True AMCG00013363
TU54454 other upstream 544359 28484273 ~ 28488783 (+) True G43682
TU54319 other upstream 1097204 27934074 ~ 27935938 (+) False AMCG00013310
TU54201 other upstream 1442324 27589139 ~ 27590818 (+) True G43476
TU54169 other upstream 1617856 27385665 ~ 27415286 (+) True AMCG00013298
TU54155 other upstream 1874421 27158302 ~ 27158721 (+) True G43434
TU54615 other downstream 44649 29104289 ~ 29104577 (+) True G43802
TU54772 other downstream 580983 29640623 ~ 29658948 (+) False AMCG00013364
TU54850 other downstream 861427 29921067 ~ 29928697 (+) False AMCG00013375
TU55045 other downstream 1159270 30218910 ~ 30222209 (+) False AMCG00013396
TU55098 other downstream 1431187 30490827 ~ 30495656 (+) True AMCG00013416

Expression Profile