RNA id: AMCG00013345



Basic Information


Item Value
RNA id AMCG00013345
length 941
RNA type mRNA
GC content 0.58
exon number 3
gene id AMCG00013345
representative True

Chromosome Information


Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 29004045 ~ 29011275 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GCTCAGGCCGAGGGAGCGGTGAGATTACGcagctgtgtgtctgttcagAGGGGTGGGCTCTCCGCACTCACGCTGGCAggttcacacaaacacagggctGGGGAGAAGTTAAGAGACAAGGCAGACAAGAAGGCAATCTGCTACTAagccagacagagagagaaaaacagagagtGAGGGACCATCTGGAAGGGAGTGTGCAGGAGAATTGACTTAgccaaagaagaaagaaagaaaaagaaagataaaaagatAGCAAGGAGAAAGACGAGAGCAGGGGAGGGTTCCCTGGATATATCACTCCTGCTCTGCACTGCTGTTCGctccttccccccccccttccttaAGTTGTGCGAGGATTGTGCCAGGAGTGTCGGGGAGGGGGGATTCCTGGATGGAGAAAGTGCAGGGAGAAGGGGAGATGGAGAGACGGGAGAGAGCTGACCAGCTCTCAGAGGCCGAGAGGGCGATGATCCGGGACACCTGGGGGAGAGTGTATGAGCACTGCGAGGACGTGGGGGTCTCCGTTCTCATCAGATTCTTCGTGAACTTCCCCTCAGCCAAGCAGTACTTCAGCCAGTTCCGAGACATGGAGGACCCCGAGGAGATGGAGCAGAGCCCGCAGCTGCGCAAGCACGCCCGCCGGGTCATGAATGCCATCAACACGGTGGTGGAGAACATCAGCGACGCCGACAAGGTCTCCTCCATCCTGGGGCTGGTGGGCCGAGCGCACGCCCTCAAGCACAAGGTGGAGCCCATGTACTTCAAGaTCCTAAGCGGGGTGATACTTGAGGTGCTGTCGGAGGAATACCCAGACTGCTTCACGGTGGACGTGCAGCGCGTCTGGACCAAACTGATGGGGGCCGTGTACTGGCACGTAACCGCGGCCTACAAGGAAGTGGGCTGGGTGCAGCTGTCCAGCTCCGCGGTGTGAAGGGcgg

Function


GO: NA

KEGG:

id description
K21894 CYGB; cytoglobin

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU54489 lncRNA upstream 265292 28738123 ~ 28738753 (+) True G43712
TU54481 lncRNA upstream 321871 28680810 ~ 28682174 (+) True AMCG00013336
TU54482 lncRNA upstream 321871 28680810 ~ 28682174 (+) False AMCG00013336
TU54444 lncRNA upstream 614085 28389689 ~ 28389960 (+) True G43673
TU54325 lncRNA upstream 931246 28068646 ~ 28072799 (+) True AMCG00013317
TU54625 lncRNA downstream 138703 29149978 ~ 29151334 (+) True G43810
TU54612 lncRNA downstream 145424 29156699 ~ 29158493 (+) True G43799
TU54679 lncRNA downstream 165776 29177051 ~ 29178266 (+) False G43853
TU54680 lncRNA downstream 165776 29177051 ~ 29178266 (+) False G43853
TU54681 lncRNA downstream 165776 29177051 ~ 29178266 (+) True G43853
AMCG00013343 mRNA upstream 33891 28969528 ~ 28970154 (+) True AMCG00013343
AMCG00013342 mRNA upstream 68004 28918753 ~ 28936041 (+) True AMCG00013342
AMCG00013341 mRNA upstream 89205 28841752 ~ 28914840 (+) True AMCG00013341
AMCG00013340 mRNA upstream 204739 28795746 ~ 28799306 (+) True AMCG00013340
AMCG00013338 mRNA upstream 270374 28727573 ~ 28733671 (+) True AMCG00013338
AMCG00013346 mRNA downstream 10732 29022007 ~ 29029208 (+) True AMCG00013346
AMCG00013344 mRNA downstream 21867 29033142 ~ 29059640 (+) True AMCG00013344
AMCG00013350 mRNA downstream 56555 29067830 ~ 29068402 (+) True AMCG00013350
AMCG00013351 mRNA downstream 68725 29080000 ~ 29091607 (+) True AMCG00013351
AMCG00013352 mRNA downstream 104178 29115453 ~ 29121435 (+) True AMCG00013352
TU54454 other upstream 515262 28484273 ~ 28488783 (+) True G43682
TU54319 other upstream 1068107 27934074 ~ 27935938 (+) False AMCG00013310
TU54201 other upstream 1413227 27589139 ~ 27590818 (+) True G43476
TU54169 other upstream 1588759 27385665 ~ 27415286 (+) True AMCG00013298
TU54155 other upstream 1845324 27158302 ~ 27158721 (+) True G43434
TU54615 other downstream 93014 29104289 ~ 29104577 (+) True G43802
TU54772 other downstream 629348 29640623 ~ 29658948 (+) False AMCG00013364
TU54850 other downstream 909792 29921067 ~ 29928697 (+) False AMCG00013375
TU55045 other downstream 1207635 30218910 ~ 30222209 (+) False AMCG00013396
TU55098 other downstream 1479552 30490827 ~ 30495656 (+) True AMCG00013416

Expression Profile