Gene
RNA
| Item | Value |
|---|---|
| RNA id | AMCG00013346 |
| length | 898 |
| RNA type | mRNA |
| GC content | 0.52 |
| exon number | 4 |
| gene id | AMCG00013346 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CM030125.1 |
| NCBI id | CM030125.1 |
| chromosome length | 49972098 |
| location | 29022007 ~ 29029208 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| species | bowfin (Amia calva) |
| id | name | namespace |
|---|---|---|
| GO:0097458 | obsolete neuron part | cellular_component |
| GO:0001917 | photoreceptor inner segment | cellular_component |
| id | description |
|---|---|
| ko04744 | Phototransduction |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU54489 | lncRNA | upstream | 283254 | 28738123 ~ 28738753 (+) | True | G43712 |
| TU54481 | lncRNA | upstream | 339833 | 28680810 ~ 28682174 (+) | True | AMCG00013336 |
| TU54482 | lncRNA | upstream | 339833 | 28680810 ~ 28682174 (+) | False | AMCG00013336 |
| TU54444 | lncRNA | upstream | 632047 | 28389689 ~ 28389960 (+) | True | G43673 |
| TU54325 | lncRNA | upstream | 949208 | 28068646 ~ 28072799 (+) | True | AMCG00013317 |
| TU54625 | lncRNA | downstream | 120770 | 29149978 ~ 29151334 (+) | True | G43810 |
| TU54612 | lncRNA | downstream | 127491 | 29156699 ~ 29158493 (+) | True | G43799 |
| TU54679 | lncRNA | downstream | 147843 | 29177051 ~ 29178266 (+) | False | G43853 |
| TU54680 | lncRNA | downstream | 147843 | 29177051 ~ 29178266 (+) | False | G43853 |
| TU54681 | lncRNA | downstream | 147843 | 29177051 ~ 29178266 (+) | True | G43853 |
| AMCG00013345 | mRNA | upstream | 10732 | 29004045 ~ 29011275 (+) | True | AMCG00013345 |
| AMCG00013343 | mRNA | upstream | 51853 | 28969528 ~ 28970154 (+) | True | AMCG00013343 |
| AMCG00013342 | mRNA | upstream | 85966 | 28918753 ~ 28936041 (+) | True | AMCG00013342 |
| AMCG00013341 | mRNA | upstream | 107167 | 28841752 ~ 28914840 (+) | True | AMCG00013341 |
| AMCG00013340 | mRNA | upstream | 222701 | 28795746 ~ 28799306 (+) | True | AMCG00013340 |
| AMCG00013344 | mRNA | downstream | 3934 | 29033142 ~ 29059640 (+) | True | AMCG00013344 |
| AMCG00013350 | mRNA | downstream | 38622 | 29067830 ~ 29068402 (+) | True | AMCG00013350 |
| AMCG00013351 | mRNA | downstream | 50792 | 29080000 ~ 29091607 (+) | True | AMCG00013351 |
| AMCG00013352 | mRNA | downstream | 86245 | 29115453 ~ 29121435 (+) | True | AMCG00013352 |
| AMCG00013356 | mRNA | downstream | 121034 | 29150242 ~ 29156585 (+) | True | AMCG00013356 |
| TU54454 | other | upstream | 533224 | 28484273 ~ 28488783 (+) | True | G43682 |
| TU54319 | other | upstream | 1086069 | 27934074 ~ 27935938 (+) | False | AMCG00013310 |
| TU54201 | other | upstream | 1431189 | 27589139 ~ 27590818 (+) | True | G43476 |
| TU54169 | other | upstream | 1606721 | 27385665 ~ 27415286 (+) | True | AMCG00013298 |
| TU54155 | other | upstream | 1863286 | 27158302 ~ 27158721 (+) | True | G43434 |
| TU54615 | other | downstream | 75081 | 29104289 ~ 29104577 (+) | True | G43802 |
| TU54772 | other | downstream | 611415 | 29640623 ~ 29658948 (+) | False | AMCG00013364 |
| TU54850 | other | downstream | 891859 | 29921067 ~ 29928697 (+) | False | AMCG00013375 |
| TU55045 | other | downstream | 1189702 | 30218910 ~ 30222209 (+) | False | AMCG00013396 |
| TU55098 | other | downstream | 1461619 | 30490827 ~ 30495656 (+) | True | AMCG00013416 |
