RNA id: AMCG00013348


Basic Information

Item Value
RNA id AMCG00013348
length 3829
RNA type mRNA
GC content 0.49
exon number 11
gene id AMCG00013348
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 28974690 ~ 28989005 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCCAGGAAGCTGTTAGGCCCTCACAACAAGTCTGTCTTCTCTCCCTCTGGAGCGCCGCGGCGTTCGTATGATTTCCGCTCCAGAATGAATGTCGCAAAAAGTGGGTATCGGGTCTTTTCTGCCAACTCCACGGCAGCCTGCACGGAGCTGGCCAAGAAGATCACGGAGCGTCTTGGCGTTGAACTTGGCAAGTCAGTCGTCTACCAGGAGCCCAATCGAGAGACCAGAGTAGATGTCAAAGAGTCCGTCCGCGGCCAAGACATCTTCATCATCCAGACCATTCCCAGAGATGTAAACACCGCCATCATGGAGTTGCTGGTCATGGCCTACGCCCTCAAGACCTCCTGTGCTAAGAACATCATCGGCGTCATCCCCTACTTTCCCTACAGCAAGCAGTGCAAGATGCGGAAGAGGGGCTCGATTGTCTGCAAGCTCCTGGCATCAATGCTGGCTAAAGCAGGTCTGACGCACATCATCACAATGGATTTACACCAGAAAGAGATCCAGGGTTTCTTTAGCTTCCCGGTGGACAACCTGCGCGCCTCCCCCTTCCTGCTGCAGTACATCCAGGAGGAGATCCCAGACTATCGCAACGCAATTATAGTGGCAAAGTCGCCGTCTGCTGCTAAAAGGGCTCAGTCATATGCCGAGCGGCTGCGGCTGGGCTTGGCGGTGATGCACGGCGAGGCGCAGTGCTCAGAGTCCGACATGGCCGACGGCAGACACTCCCCGCCCTCCGTGAGGAACAGTACCGGACACCCAGGGCTGGAGCTCCCTTGGAAGCAGCAGGCCCCGTTTCCTGGCATTGAGCTCCCAATGATGATGGCGAAGGAGAAACCGCCCATCACGGTGGTGGGGGACGTGGGAGGACGGATTGCCATCATTGTTGACGACATCATCGACGATGTGGAGGACTTTGTGGCGACGGCAGAGATCCTGAAGGAGCGAGGCGCCTACAAGATCTACATCATGGCCACGCACGGCCTGCTGTCTGCCGACGCCCCCCGTCTCATCGAGGAGTCGGCCATTGATGAGGTGGTGGTCACCAACACCGTGCCCCATGAGGTGCAGAAGCTGCAGTGCCCCAAGATCAAGACGGTGGATGTCAGCATGATCCTGGCCGAGGCCATCCGCCGCATCCACAACGGCGAGTCCATGGCGTACCTCTTCCGCAACATCACTGTGGACGACTAACGTGGTGtacgggggtggggggaggtgtgggTGGTGCGGTGCGGTGCCAGCCACGTCTGTCCGGCGCTCGACACGGCAGAGCAGAGCCCGACTGCTGAGCACGGGGGCGACGACACGatgataaacacaaacacaattccAGAAGGCTCCCGTCCCGCCTGAGCCCAGACCGATCGGACGCTGCTGCCATGCTGGTAAGATCAGAAGCGGCTCCGTTTCTGGTCTGATTGTATGATTTCTCCTCCCACccactttgtttttgtctttttttttttgtattctgaCCCAGTGGAATTGGAAGATAGTAAATGTGTTTCAGGAACTTCTATAAAGCGTGGTTATGTGGATCTGTTGTGTTTACTGGGTTTACTCTGCATGCAGGCGACGcacacttcaaaacaaacacGCCAACAGGGAAACCTGTAAACGGTTGTCCTGCCCCCTTACTGGCTTCAGCTTTCCCTGCCAACGCTGTGCCAGGGACTGTAATCCATGCCAACCATTCCCATGCTGCATTCTCTTTATTGATCAGTGTTCGTGAGTTATACGAGCAGTTCCGGTAGTTATGGTGTGAATATATAGCTGTAAAGATGTCAAGATGTCGGTGTTTTATAAACTGTTATTAGAAAGAaatgaatggttttattttttcacccaGGAGTTTGTTCACATCCTGGCTGGCTTAGTAACTGCTTTGTGACACCTTGTGACAGGCAGAAAAGTATCTATTTTCTGTTGTCGTTTCGAATCCTGCATTCGCTATGAATAATGACCTGCCCAGCTGTGAAGAGCTCTCTTCTGTCAGCCGCATGGCGCTCCCCCAGGTCTGTCGCTCGCCAGGGAGTGCTCTAGTGGACCGGTGTCGTCCGGGCGTCTGTGATTAGCGATGGATTAATGGGAGATTTTCTGTGTCCAGATAACCTCCATGGAACTGACCTCCCCCAGCCCCCATGCCCTCCGCAGATTAACGCACAACCTTGGCAGGTTTTGCCGACGTCTGCACAAAGGGGTGATAGGCTTCTATGCAGTTATATACACGCACATGTATATATGAAGGGATAACTGTACCAAACCTCTGAACAAAagtttctctgtgtttgtcccATCACACGGTTTGTCATCCCCCTCTCCACCATTTTCTGTCCCTCTGCCTCCCATCCCTCAGAGTGTCGACACCGCTTTTGTGCGGAGGCTCTCGTTGTGTGTCAGTCTCCCTGTGTCCAGCTCGGAGCGCTGCATTGAACCCCCAGTGTTAtaccactgtgtgtgtgtagaagcTATTCACTGTGActtaatgctttaattaaaaccatgaGTACGCACAGCCTAGAACTGAATTCTAaaccagagacacacactgtgcTCTCAGTCCTATTGATATCCTGTACATGCGTTTTACTTTGTTTGCAGGCATTTGCCCTGTTAACGTGTTTCAGGTGTGATTGTGTATGACATgggtaaatgtgtgtttttattattcttgggctttgtaaataaaacaaacccattaataaatgtgtgcacACAGTATTAGTGAGACTTCAGTGTTTTTGTCATGCCGAGATGATTTGCACTGATGAGTCTGGAAGCCCCGATGGAAACTTCGTTGATCTAAGATCGAAGCTTCAGACGTTTAagaacattgtgtgtgtgacatttgCTCAAGCCTTCATTTTGTAAGTTCCCAGCTAGGcgccacttttttttttctcttgcttcTGTGGTTGGTACAAAAGCTTGAATTTGCTCATTAGAGATTTTTCCAGGTCTGATAGTCTTCCAACTTGCAATGCATAATTACACCACTGGAGGGCGATCCCAGCAACTTCACTGATCCTGAAAACAGCACTCggattattataatgtatattttcaccTACGCTGAAGATCATGCAAGTCATATCCCCTCATTTCAGGCTCATGCAGTTTCTCTGGGATTGTCTGACGTTCCTCCACCCTCTTAGGAAActaacttgtatttattttaagtttgtatgatttatttttctttcttggtttCAATATTGTCACGGTAAGAGTCTCATTGTTATGATGTGGCTTTGAGACCTTGCACTCGGGTGtaatctgaataaaataaaataacgtgTTATTGAAAGCAGTGGGGTATACTGCCCAGATTCTGTGCTTGCATAGCTTATAATCTGGATGCAAGTTTCCACTCTTTAGATCCTACTGTATGTTGTCTAAGAATTCGTTTAGATTTCTGTTGCTcatacacagagaaaaacatcaAACTATGGGGCTGTGAACCTCTCTTGCCTTTGTGGCTGTCAAGTGGAAAGGGCTGTTGCTGGACCTTTGTCCTGTTTCTGTTCTTTCCccatttttgtcttttattacGGATTTATTTGGTACTTTCATTGCCACCATCTCTTCTGAGACATTGCTACGTCCTCCTGCCTGGgttgacattttcatttgtgttgtgCGTCAGATATGCGTTACTGATTTTAAACTAATTCCTTGCTTTTGCTTTCCTCCTGGTTCAGCTTTTCCAAACTgcaaaatatctgtaaaatgttacaACTTATGTTCGATTTTTCATTCATGTAAACATTAACGAGCCGGTTCCATGTTTGTACCctgatgataataaaataattaaattaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54497 lncRNA downstream 207338 28676824 ~ 28767352 (-) False G43714
TU54511 lncRNA downstream 235917 28737957 ~ 28738773 (-) True G43725
TU54496 lncRNA downstream 252524 28676824 ~ 28722166 (-) True G43714
TU54508 lncRNA downstream 256750 28716291 ~ 28717940 (-) True G43724
TU54463 lncRNA downstream 483594 28488842 ~ 28491096 (-) True G43691
TU54654 lncRNA upstream 126217 29115222 ~ 29117961 (-) True G43834
TU54656 lncRNA upstream 126217 29115222 ~ 29117961 (-) False G43834
TU54650 lncRNA upstream 130368 29119373 ~ 29121319 (-) True G43831
TU54758 lncRNA upstream 508705 29497710 ~ 29499573 (-) True G43919
TU54896 lncRNA upstream 937378 29926383 ~ 30028230 (-) True G44034
AMCG00013339 mRNA downstream 197216 28771933 ~ 28777474 (-) True AMCG00013339
AMCG00013332 mRNA downstream 453253 28502022 ~ 28521437 (-) True AMCG00013332
AMCG00013331 mRNA downstream 478691 28492946 ~ 28495999 (-) True AMCG00013331
AMCG00013326 mRNA downstream 756632 28210403 ~ 28218058 (-) True AMCG00013326
AMCG00013325 mRNA downstream 774897 28196957 ~ 28199793 (-) True AMCG00013325
AMCG00013349 mRNA upstream 2432 28991437 ~ 28996380 (-) True AMCG00013349
AMCG00013347 mRNA upstream 72883 29061888 ~ 29063240 (-) True AMCG00013347
AMCG00013353 mRNA upstream 109982 29098987 ~ 29114047 (-) True AMCG00013353
AMCG00013355 mRNA upstream 138466 29127471 ~ 29155513 (-) True AMCG00013355
AMCG00013354 mRNA upstream 172225 29161230 ~ 29173911 (-) True AMCG00013354
TU54456 other downstream 506784 28467312 ~ 28467906 (-) True G43684
TU54344 other downstream 901903 28068213 ~ 28072787 (-) True G43594
TU54196 other downstream 1405539 27568764 ~ 27569151 (-) True G43473
TU54172 other downstream 1681617 27273229 ~ 27293073 (-) True AMCG00013295
TU53964 other downstream 2417366 26556354 ~ 26557324 (-) True AMCG00013264
TU54700 other upstream 264391 29253396 ~ 29254316 (-) True G43869
TU54894 other upstream 1017759 30006764 ~ 30010700 (-) False G44034
TU54953 other upstream 1092031 30081036 ~ 30083345 (-) False AMCG00013386
TU54954 other upstream 1092031 30081036 ~ 30083345 (-) True AMCG00013386
TU55007 other upstream 1176812 30165817 ~ 30169136 (-) False AMCG00013390

Expression Profile